Parental gene:

RPL13A, ENSMICG00000009318

Aliases:None
Description:ribosomal protein L13a [Source:HGNC Symbol;Acc:10304]
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_398:227491..232460(+)


>ENSMICG00000009318
ATGGCGGAGGGGCAGGTCCTGGTGCTTGATGGCCGAGGCCATCTCCTGGGCCGGTTGGCGGCCATCGTGGCCAAACAGGT
ACTGCTGGGCCGGAAGGTGGTGGTTGTGCGCTGTGAGGGCATCAATATTTCTGGCAATTTCTATAGAAACAAGCTAAAGT
ACCTGGCCTTCCTCCGCAAACGGATGAACACCAACCCTTCCCGGGGGCCCTACCATTTCCGGGCCCCCAGCCGCATTTTC
TGGCGGACTGTGCGAGGCATGCTGCCCCACAAGACTAAGCGAGGCCAGGCTGCCCTGGACCGCCTCAAGGTGTTTGATGG
GATCCCACCACCCTATGACAAGAAAAAGCGGATGGTGGTTCCTGCTGCCCTCAAGGTTGTGCGTCTGAAGCCTACAAGAA
AGTTTGCCTACCTGGGTCGTCTGGCTCATGAGGTTGGCTGGAAGTACCAGGCAGTGACAGCCACCCTGGAGGAGAAGAGG
AAGGAGAAGGCCAAGATCCACTACCGGAAGAAAAAACAGCTCATGAGGCTACGGAAACAGGCCGAAAAGAACGTGGAGAA
GAAAATTGACAAATACACAGAGGTCCTCAAGACCCATGGACTCCTGGTCTGA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005296 possible_ortholog 3 retrogenes
retro_btau_1251, retro_btau_719, retro_btau_789,
Callithrix jacchus ENSCJAG00000000072 possible_ortholog 16 retrogenes
retro_cjac_1130, retro_cjac_1706, retro_cjac_182, retro_cjac_197, retro_cjac_1997, retro_cjac_2170, retro_cjac_2322, retro_cjac_2467, retro_cjac_2468, retro_cjac_2665, retro_cjac_2699, retro_cjac_2755, retro_cjac_3009, retro_cjac_664, retro_cjac_941, retro_cjac_972,
Echinops telfairi ENSETEG00000017076 possible_ortholog 2 retrogenes
retro_etel_46, retro_etel_853,
Loxodonta africana ENSLAFG00000016213 ortholog_one2one 3 retrogenes
retro_lafr_1160, retro_lafr_576, retro_lafr_810,
Macaca mulatta ENSMMUG00000007551 ortholog_one2one 14 retrogenes
retro_mmul_1100, retro_mmul_1256, retro_mmul_1638, retro_mmul_1756, retro_mmul_2179, retro_mmul_2249, retro_mmul_2352, retro_mmul_2399, retro_mmul_296, retro_mmul_500, retro_mmul_520, retro_mmul_547, retro_mmul_837, retro_mmul_924,
Mus musculus ENSMUSG00000074129 possible_ortholog 3 retrogenes
retro_mmus_1129, retro_mmus_1334, retro_mmus_20,
Nomascus leucogenys ENSNLEG00000005211 ortholog_one2one 23 retrogenes
retro_nleu_1173, retro_nleu_1429, retro_nleu_1568, retro_nleu_159, retro_nleu_1823, retro_nleu_1873, retro_nleu_1892, retro_nleu_1897, retro_nleu_2047, retro_nleu_228, retro_nleu_2398, retro_nleu_2415, retro_nleu_2463, retro_nleu_2614, retro_nleu_2789, retro_nleu_2928, retro_nleu_330, retro_nleu_392, retro_nleu_441, retro_nleu_475, retro_nleu_513, retro_nleu_744, retro_nleu_760,
Otolemur garnettii ENSOGAG00000004625 ortholog_one2many 7 retrogenes
retro_ogar_1496, retro_ogar_211, retro_ogar_2254, retro_ogar_3148, retro_ogar_54, retro_ogar_596, retro_ogar_612,
Pongo abelii ENSPPYG00000010251 possible_ortholog 1 retrogene
retro_pabe_148,
Pan troglodytes ENSPTRG00000011298 ortholog_one2one 1 retrogene
retro_ptro_31,
Pteropus vampyrus ENSPVAG00000010958 ortholog_one2one 3 retrogenes
retro_pvam_129, retro_pvam_625, retro_pvam_771,
Rattus norvegicus ENSRNOG00000020618 possible_ortholog 10 retrogenes
retro_rnor_1073, retro_rnor_1112, retro_rnor_1212, retro_rnor_1292, retro_rnor_1357, retro_rnor_1742, retro_rnor_564, retro_rnor_593, retro_rnor_665, retro_rnor_988,
Sus scrofa ENSSSCG00000003166 possible_ortholog 4 retrogenes
retro_sscr_290, retro_sscr_300, retro_sscr_392, retro_sscr_743,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmur_65 63.78 62.07
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2. retro_mmur_240 80.75 91.63
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3. retro_mmur_283 51.72 97.54
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4. retro_mmur_311 89.94 86.70
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5. retro_mmur_359 81.37 100.00
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6. retro_mmur_736 67.88 66.01
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Download FASTA sequences of all ENSMICG00000009318 retrocopies