RetrogeneDB - Parental gene ENSNLEG00000002872 details

Parental gene:	RPL23A, ENSNLEG00000002872
Aliases:	None
Description:	None
Organism:	*Gibbon (Nomascus leucogenys)*
Coordinates:	GL397407.1:1592057..1595984(+)

                            
>ENSNLEG00000002872
CATCCACTGGTTGGCGCTCCATATCCCCGGGCCTGTAACGAATTAGTGCCCTCAGCTTTAACCATTTTCCTTCTGGTTCA

TGTTCAACCGGCTTACATTACCCGCCCCCTCCGCAGCGTGGTTTTGCGATGGGCTCCTGCCCCTCCTAAAGCCGAAGCCA

AAGCGAAGGCTTTAAAGGCCAAGAAGGCAGTGTTGAAAGGTGTCCACAGCCACAAAAAAAAGAAGATCCGCACGTCACCC

ACCTTCCGGCGGCCCAAGACACTGCGACTCCGGAGACAGCCTAAATATCCTCGGAAGAGCGCTCCCAGGAGAAACAAGCT

TGACCACTATGCTATCATCAAGTTTCCGCTGACCACTGAGTCTGCCATGAAGAAGATAGAAGACAACAACACACTTGTGT

TCATTGTGGATGTTAAAGCCAACAAGCACCAGATTAAACAGGCTGTGAAGAAGCTCTATGACATCGATGTGGCCAAGGTC

AACACCCTGATTCGGCCTGATGGAGAGAAGAAAGCATATGTTCGACTGGCTCCTGATTACGATGCTTTGGATGTTGCCAA

CAAAATTGGGATCATCTAA

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000004684	possible_ortholog	31 retrogenes	retro_amel_1044, retro_amel_1154, retro_amel_121, retro_amel_1254, retro_amel_1302, retro_amel_1383, retro_amel_1391, retro_amel_1423, retro_amel_1503, retro_amel_1505, retro_amel_1511, retro_amel_1527, retro_amel_1532, retro_amel_1568, retro_amel_1576, retro_amel_1585, retro_amel_1702, retro_amel_1822, retro_amel_288, retro_amel_304, retro_amel_323, retro_amel_467, retro_amel_479, retro_amel_514, retro_amel_667, retro_amel_75, retro_amel_773, retro_amel_843, retro_amel_894, retro_amel_901, retro_amel_956,
Bos taurus	ENSBTAG00000046394	possible_ortholog	6 retrogenes	retro_btau_132, retro_btau_159, retro_btau_169, retro_btau_178, retro_btau_237, retro_btau_8,
Callithrix jacchus	ENSCJAG00000013126	possible_ortholog	7 retrogenes	retro_cjac_118, retro_cjac_154, retro_cjac_20, retro_cjac_258, retro_cjac_30, retro_cjac_315, retro_cjac_46,
Cavia porcellus	ENSCPOG00000001452	possible_ortholog	6 retrogenes	retro_cpor_1275, retro_cpor_1304, retro_cpor_1311, retro_cpor_153, retro_cpor_445, retro_cpor_966,
Dasypus novemcinctus	ENSDNOG00000019487	ortholog_one2one	65 retrogenes	retro_dnov_1018, retro_dnov_1065, retro_dnov_1069, retro_dnov_1082, retro_dnov_1169, retro_dnov_120, retro_dnov_123, retro_dnov_1238, retro_dnov_127, retro_dnov_1283, retro_dnov_1365, retro_dnov_1460, retro_dnov_1514, retro_dnov_1538, retro_dnov_1541, retro_dnov_1597, retro_dnov_171, retro_dnov_1781, retro_dnov_1793, retro_dnov_1816, retro_dnov_183, retro_dnov_1835, retro_dnov_1837, retro_dnov_1873, retro_dnov_1926, retro_dnov_203, retro_dnov_2046, retro_dnov_2051, retro_dnov_2089, retro_dnov_2178, retro_dnov_2256, retro_dnov_2278, retro_dnov_2284, retro_dnov_2343, retro_dnov_2368, retro_dnov_246, retro_dnov_2493, retro_dnov_2563, retro_dnov_2573, retro_dnov_267, retro_dnov_372, retro_dnov_401, retro_dnov_429, retro_dnov_470, retro_dnov_499, retro_dnov_556, retro_dnov_581, retro_dnov_591, retro_dnov_611, retro_dnov_625, retro_dnov_636, retro_dnov_64, retro_dnov_67, retro_dnov_683, retro_dnov_704, retro_dnov_718, retro_dnov_731, retro_dnov_736, retro_dnov_749, retro_dnov_769, retro_dnov_813, retro_dnov_832, retro_dnov_903, retro_dnov_929, retro_dnov_972,
Equus caballus	ENSECAG00000008928	possible_ortholog	1 retrogene	retro_ecab_42,
Felis catus	ENSFCAG00000004021	possible_ortholog	35 retrogenes	retro_fcat_1003, retro_fcat_1011, retro_fcat_1030, retro_fcat_1039, retro_fcat_1054, retro_fcat_1071, retro_fcat_1073, retro_fcat_11, retro_fcat_1124, retro_fcat_1161, retro_fcat_1202, retro_fcat_1205, retro_fcat_1275, retro_fcat_1389, retro_fcat_1659, retro_fcat_1670, retro_fcat_1748, retro_fcat_1787, retro_fcat_1796, retro_fcat_1810, retro_fcat_182, retro_fcat_185, retro_fcat_1856, retro_fcat_1905, retro_fcat_1909, retro_fcat_1944, retro_fcat_2022, retro_fcat_289, retro_fcat_364, retro_fcat_476, retro_fcat_603, retro_fcat_657, retro_fcat_765, retro_fcat_898, retro_fcat_950,
Gorilla gorilla	ENSGGOG00000016736	ortholog_one2one	26 retrogenes	retro_ggor_1027, retro_ggor_1028, retro_ggor_1123, retro_ggor_120, retro_ggor_123, retro_ggor_1284, retro_ggor_140, retro_ggor_1431, retro_ggor_158, retro_ggor_1650, retro_ggor_1743, retro_ggor_1789, retro_ggor_1911, retro_ggor_1948, retro_ggor_2164, retro_ggor_2239, retro_ggor_2285, retro_ggor_229, retro_ggor_2409, retro_ggor_2475, retro_ggor_2568, retro_ggor_2764, retro_ggor_2773, retro_ggor_580, retro_ggor_611, retro_ggor_642,
Loxodonta africana	ENSLAFG00000013387	possible_ortholog	16 retrogenes	retro_lafr_1176, retro_lafr_153, retro_lafr_237, retro_lafr_33, retro_lafr_335, retro_lafr_442, retro_lafr_510, retro_lafr_525, retro_lafr_551, retro_lafr_557, retro_lafr_643, retro_lafr_78, retro_lafr_891, retro_lafr_908, retro_lafr_957, retro_lafr_96,
Myotis lucifugus	ENSMLUG00000012448	possible_ortholog	4 retrogenes	retro_mluc_175, retro_mluc_2375, retro_mluc_353, retro_mluc_91,
Monodelphis domestica	ENSMODG00000019297	possible_ortholog	3 retrogenes	retro_mdom_120, retro_mdom_870, retro_mdom_912,
Mustela putorius furo	ENSMPUG00000014179	possible_ortholog	12 retrogenes	retro_mputfur_102, retro_mputfur_106, retro_mputfur_123, retro_mputfur_159, retro_mputfur_168, retro_mputfur_179, retro_mputfur_3, retro_mputfur_333, retro_mputfur_42, retro_mputfur_52, retro_mputfur_599, retro_mputfur_91,
Mus musculus	ENSMUSG00000058546	possible_ortholog	8 retrogenes	retro_mmus_1, retro_mmus_126, retro_mmus_130, retro_mmus_184, retro_mmus_224, retro_mmus_64, retro_mmus_84, retro_mmus_95,
Procavia capensis	ENSPCAG00000017002	ortholog_one2one	30 retrogenes	retro_pcap_103, retro_pcap_122, retro_pcap_131, retro_pcap_187, retro_pcap_213, retro_pcap_215, retro_pcap_221, retro_pcap_233, retro_pcap_246, retro_pcap_279, retro_pcap_320, retro_pcap_321, retro_pcap_331, retro_pcap_336, retro_pcap_342, retro_pcap_347, retro_pcap_368, retro_pcap_372, retro_pcap_382, retro_pcap_390, retro_pcap_392, retro_pcap_396, retro_pcap_437, retro_pcap_450, retro_pcap_453, retro_pcap_460, retro_pcap_61, retro_pcap_70, retro_pcap_82, retro_pcap_96,
Pongo abelii	ENSPPYG00000008108	possible_ortholog	49 retrogenes	retro_pabe_1030, retro_pabe_1203, retro_pabe_1206, retro_pabe_1335, retro_pabe_1430, retro_pabe_1459, retro_pabe_1590, retro_pabe_1721, retro_pabe_1747, retro_pabe_1752, retro_pabe_1766, retro_pabe_1797, retro_pabe_1846, retro_pabe_1848, retro_pabe_1867, retro_pabe_1926, retro_pabe_1947, retro_pabe_1995, retro_pabe_2018, retro_pabe_2057, retro_pabe_2075, retro_pabe_2082, retro_pabe_2091, retro_pabe_2132, retro_pabe_2156, retro_pabe_2221, retro_pabe_2334, retro_pabe_234, retro_pabe_243, retro_pabe_2612, retro_pabe_2738, retro_pabe_2773, retro_pabe_2820, retro_pabe_2944, retro_pabe_3006, retro_pabe_3036, retro_pabe_3200, retro_pabe_3371, retro_pabe_3477, retro_pabe_351, retro_pabe_3528, retro_pabe_354, retro_pabe_474, retro_pabe_627, retro_pabe_754, retro_pabe_765, retro_pabe_799, retro_pabe_946, retro_pabe_984,
Pteropus vampyrus	ENSPVAG00000002922	ortholog_one2one	32 retrogenes	retro_pvam_1002, retro_pvam_1004, retro_pvam_1083, retro_pvam_1113, retro_pvam_113, retro_pvam_1211, retro_pvam_1226, retro_pvam_1268, retro_pvam_1300, retro_pvam_1329, retro_pvam_1350, retro_pvam_1363, retro_pvam_1456, retro_pvam_159, retro_pvam_249, retro_pvam_385, retro_pvam_425, retro_pvam_436, retro_pvam_445, retro_pvam_511, retro_pvam_526, retro_pvam_537, retro_pvam_564, retro_pvam_593, retro_pvam_72, retro_pvam_729, retro_pvam_752, retro_pvam_840, retro_pvam_897, retro_pvam_927, retro_pvam_947, retro_pvam_95,
Rattus norvegicus	ENSRNOG00000023344	possible_ortholog	6 retrogenes	retro_rnor_136, retro_rnor_145, retro_rnor_211, retro_rnor_40, retro_rnor_404, retro_rnor_62,
Sarcophilus harrisii	ENSSHAG00000014549	possible_ortholog	13 retrogenes	retro_shar_188, retro_shar_373, retro_shar_407, retro_shar_448, retro_shar_498, retro_shar_564, retro_shar_624, retro_shar_630, retro_shar_685, retro_shar_698, retro_shar_824, retro_shar_829, retro_shar_835,
Sus scrofa	ENSSSCG00000017768	possible_ortholog	9 retrogenes	retro_sscr_1025, retro_sscr_1047, retro_sscr_1133, retro_sscr_239, retro_sscr_356, retro_sscr_418, retro_sscr_598, retro_sscr_638, retro_sscr_952,
Sus scrofa	ENSSSCG00000029802	possible_ortholog	4 retrogenes	retro_sscr_115, retro_sscr_170, retro_sscr_248, retro_sscr_430,
Ictidomys tridecemlineatus	ENSSTOG00000011328	possible_ortholog	23 retrogenes	retro_itri_1022, retro_itri_1035, retro_itri_1051, retro_itri_1059, retro_itri_1071, retro_itri_1150, retro_itri_1261, retro_itri_1327, retro_itri_1347, retro_itri_1460, retro_itri_1507, retro_itri_217, retro_itri_225, retro_itri_304, retro_itri_360, retro_itri_494, retro_itri_626, retro_itri_627, retro_itri_734, retro_itri_761, retro_itri_791, retro_itri_965, retro_itri_972,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_nleu_145	69.48	77.08	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_nleu_158	70.78	77.08	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_nleu_160	70.13	77.08	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_nleu_161	69.93	76.56	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_nleu_203	77.93	75.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_nleu_211	85.19	55.73	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_nleu_213	81.76	77.08	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_nleu_328	65.08	64.58	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_nleu_355	66.67	73.96	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_nleu_356	68.97	58.33	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_nleu_401	81.88	77.08	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_nleu_473	83.50	52.60	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_nleu_518	84.14	74.48	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_nleu_641	70.07	76.04	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_nleu_902	90.00	77.08	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_nleu_938	61.64	81.77	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_nleu_966	77.33	77.08	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_nleu_1004	79.84	62.50	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_nleu_1216	85.33	77.08	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_nleu_1273	81.82	79.17	Please wait, loading	Please wait, loading	Please wait, loading
21.	retro_nleu_1290	77.48	77.08	Please wait, loading	Please wait, loading	Please wait, loading
22.	retro_nleu_1398	82.31	76.56	Please wait, loading	Please wait, loading	Please wait, loading
23.	retro_nleu_1448	72.30	77.08	Please wait, loading	Please wait, loading	Please wait, loading
24.	retro_nleu_1544	88.24	61.98	Please wait, loading	Please wait, loading	Please wait, loading
25.	retro_nleu_1775	64.86	75.52	Please wait, loading	Please wait, loading	Please wait, loading
26.	retro_nleu_1782	74.53	80.21	Please wait, loading	Please wait, loading	Please wait, loading
27.	retro_nleu_2004	78.52	77.08	Please wait, loading	Please wait, loading	Please wait, loading
28.	retro_nleu_2010	74.80	63.54	Please wait, loading	Please wait, loading	Please wait, loading
29.	retro_nleu_2115	70.13	77.08	Please wait, loading	Please wait, loading	Please wait, loading
30.	retro_nleu_2312	80.67	76.56	Please wait, loading	Please wait, loading	Please wait, loading
31.	retro_nleu_2339	77.18	77.08	Please wait, loading	Please wait, loading	Please wait, loading
32.	retro_nleu_2406	86.67	69.79	Please wait, loading	Please wait, loading	Please wait, loading
33.	retro_nleu_2413	70.34	75.00	Please wait, loading	Please wait, loading	Please wait, loading
34.	retro_nleu_2455	81.08	77.08	Please wait, loading	Please wait, loading	Please wait, loading
35.	retro_nleu_2468	95.27	77.08	Please wait, loading	Please wait, loading	Please wait, loading
36.	retro_nleu_2474	88.51	77.08	Please wait, loading	Please wait, loading	Please wait, loading
37.	retro_nleu_2492	85.86	51.56	Please wait, loading	Please wait, loading	Please wait, loading
38.	retro_nleu_2514	71.97	79.17	Please wait, loading	Please wait, loading	Please wait, loading
39.	retro_nleu_2594	64.05	79.17	Please wait, loading	Please wait, loading	Please wait, loading
40.	retro_nleu_2661	81.05	77.08	Please wait, loading	Please wait, loading	Please wait, loading
41.	retro_nleu_2664	60.26	77.08	Please wait, loading	Please wait, loading	Please wait, loading
42.	retro_nleu_2784	85.06	79.17	Please wait, loading	Please wait, loading	Please wait, loading
43.	retro_nleu_2788	84.56	75.00	Please wait, loading	Please wait, loading	Please wait, loading
44.	retro_nleu_2925	77.85	76.56	Please wait, loading	Please wait, loading	Please wait, loading
45.	retro_nleu_2943	94.63	77.08	Please wait, loading	Please wait, loading	Please wait, loading
46.	retro_nleu_2960	70.97	77.08	Please wait, loading	Please wait, loading	Please wait, loading
47.	retro_nleu_2964	70.78	77.08	Please wait, loading	Please wait, loading	Please wait, loading
48.	retro_nleu_3026	69.48	77.08	Please wait, loading	Please wait, loading	Please wait, loading
49.	retro_nleu_3031	74.17	77.08	Please wait, loading	Please wait, loading	Please wait, loading
50.	retro_nleu_3037	71.14	76.04	Please wait, loading	Please wait, loading	Please wait, loading
51.	retro_nleu_3056	78.52	76.04	Please wait, loading	Please wait, loading	Please wait, loading
52.	retro_nleu_3096	74.00	76.04	Please wait, loading	Please wait, loading	Please wait, loading
53.	retro_nleu_3101	79.20	63.54	Please wait, loading	Please wait, loading	Please wait, loading
54.	retro_nleu_3107	63.11	62.50	Please wait, loading	Please wait, loading	Please wait, loading
55.	retro_nleu_3108	73.86	77.08	Please wait, loading	Please wait, loading	Please wait, loading
56.	retro_nleu_3110	70.13	77.08	Please wait, loading	Please wait, loading	Please wait, loading
57.	retro_nleu_3114	70.78	77.08	Please wait, loading	Please wait, loading	Please wait, loading
58.	retro_nleu_3118	75.82	77.08	Please wait, loading	Please wait, loading	Please wait, loading
59.	retro_nleu_3123	69.48	77.08	Please wait, loading	Please wait, loading	Please wait, loading
60.	retro_nleu_3124	70.78	77.08	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSNLEG00000002872 retrocopies

Parental gene:

RPL23A, ENSNLEG00000002872