Parental gene:

Srsf10, ENSMUSG00000028676

Aliases:Srsf10, FUSIP2, Fusip1, NSSR1, NSSR2, Nssr, SRrp40, Sfrs13a, Srsf13a, TASR, TASR1, TASR2
Description:serine/arginine-rich splicing factor 10 [Source:MGI Symbol;Acc:MGI:1333805]
Organism:Mouse (Mus musculus)
Coordinates:4:135855746..135869908(+)


>ENSMUSG00000028676
ATGTCCCGATACCTGCGCCCCCCTAACACGTCTCTGTTCGTCAGGAACGTGGCGGACGACACCAGGTCTGAAGATTTACG
TCGGGAATTTGGTCGTTATGGTCCAATAGTAGATGTTTATGTCCCACTTGATTTCTACACTCGGCGTCCAAGAGGATTTG
CATATGTTCAATTTGAGGATGTTCGTGATGCTGAAGACGCTTTACATAATTTGGACAGAAAATGGATTTGTGGGCGTCAG
ATTGAAATCCAGTTCGCACAGGGGGATCGGAAGACACCAAATCAAATGAAAGCCAAGGAAGGGAGGAATGTATACAGCTC
TTCACGATATGACGATTATGACCGATATAGACGCTCTCGAAGCCGGAGTTATGAAAGGAGAAGATCGAGGAGTCGCTCCT
TTGATTATAACTATAGGAGATCTTACAGTCCTAGAAACAGTAGACCGACTGGAAGACCACGGCGTAGCCGAAGCCATTCC
GACAATGATAGATTCAAACACCGAAATCGATCTTTTTCAAGATCTAAATCCAATTCAAGATCACGGTCCAAGTCCCAGCC
CAAGAAAGAAATGAAGGCTAAATCACGTTCTAGGTCTGCATCTCACACCAAAACTAGAGGCACCTCTAAAACAGATTCCA
AAACACATTATAAGTCTGGCTCAAGATATGAAAAGGAATCAAGGAAAAAAGAACCACCTAGATCCAAATCTCAGTCAAGA
TCACAGTCTAGGTCTAGGTCAAAATCTAGGTCAAGGTCTTGGACTAGTCCCAAGTCCAGTGGCCACTGA

Library Parental gene expression (RPM)
SRP007412_brain 36 .54 RPM
SRP007412_cerebellum 30 .39 RPM
SRP007412_heart 17 .37 RPM
SRP007412_kidney 28 .95 RPM
SRP007412_liver 15 .68 RPM
SRP007412_testis 37 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004836 possible_ortholog 1 retrogene
retro_chof_7,
Callithrix jacchus ENSCJAG00000020883 possible_ortholog 9 retrogenes
retro_cjac_1126, retro_cjac_1170, retro_cjac_2176, retro_cjac_2595, retro_cjac_2638, retro_cjac_3852, retro_cjac_628, retro_cjac_705, retro_cjac_864,
Cavia porcellus ENSCPOG00000024533 ortholog_one2one 1 retrogene
retro_cpor_1098,
Dasypus novemcinctus ENSDNOG00000008699 possible_ortholog 3 retrogenes
retro_dnov_1327, retro_dnov_1809, retro_dnov_2244,
Erinaceus europaeus ENSEEUG00000014286 ortholog_one2one 1 retrogene
retro_eeur_522,
Homo sapiens ENSG00000188529 possible_ortholog 5 retrogenes
retro_hsap_1343, retro_hsap_1940, retro_hsap_2445, retro_hsap_3054, retro_hsap_4295,
Loxodonta africana ENSLAFG00000026905 ortholog_one2one 1 retrogene
retro_lafr_148,
Myotis lucifugus ENSMLUG00000028520 possible_ortholog 1 retrogene
retro_mluc_89,
Ochotona princeps ENSOPRG00000018613 ortholog_one2one 3 retrogenes
retro_opri_1067, retro_opri_295, retro_opri_916,
Pan troglodytes ENSPTRG00000024234 ortholog_one2one 4 retrogenes
retro_ptro_1295, retro_ptro_1413, retro_ptro_1986, retro_ptro_918,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_982 95.95 80.87
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2. retro_mmus_1081 90.91 96.93
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3. retro_mmus_1311 69.51 61.83
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4. retro_mmus_1814 77.84 62.60
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5. retro_mmus_3480 71.98 87.79
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Download FASTA sequences of all ENSMUSG00000028676 retrocopies