Parental gene:

Atp5c1, ENSMUSG00000025781

Aliases:Atp5c1, 1700094F02Rik
Description:ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 [Source:MGI Symbol;Acc:MGI:1261437]
Organism:Mouse (Mus musculus)
Coordinates:2:10056015..10080510(-)


>ENSMUSG00000025781
ATGTTCTCGCGGGCGAGCGTTGTCGGGCTGTCGGCCTGCGCCGTGCAGCCGCAATGGATCCAAGTTCGAAACATGGCAAC
TCTGAAAGATATTACCAGGAGACTGAAGTCCATCAAAAACATCCAGAAAATTACCAAGTCTATGAAGATGGTGGCAGCTG
CAAAGTATGCCCGGGCTGAGCGGGAGCTGAAGCCTGCCCGAGTGTATGGGACAGGTTCTTTGGCTCTGTATGAGAAGGCT
GATATTAAGGCACCTGAGGACAAGAAGAAGCACCTCATTATTGGTGTGTCCTCAGATAGAGGGCTTTGTGGTGCTATTCA
CTCCTCAGTGGCTAAACAGATGAAGAATGAAGTGGCTGCCCTCACAGCAGCTGGGAAAGAAGTTATGATTGTTGGAGTTG
GTGAAAAAATCAAGGGCATACTTTATAGGACTCATTCTGATCAGTTTTTGGTGTCATTCAAAGATGTGGGACGGAAGCCT
CCTACTTTTGGAGATGCATCAGTCATTGCCCTTGAGTTGTTAAATTCTGGATATGAATTTGATGAAGGCTCTATCATTTT
TAATCAGTTCAAGTCTGTTATCTCCTACAAGACAGAAGAGAAGCCCATCTTCTCTCTGAATACCATTGCGACTGCTGAGA
CCATGAGCATCTATGATGACATTGATGCTGATGTGCTGCAGAATTACCAGGAGTACAATCTGGCCAACCTCATCTACTAC
TCCCTGAAGGAGTCCACCACCAGTGAGCAGAGTGCCAGGATGACCGCCATGGACAACGCCAGCAAGAACGCTTCTGATAT
GATTGACAAATTGACCTTGACTTTCAACCGCACCCGCCAGGCTGTCATCACAAAGGAGTTGATTGAAATCATCTCTGGGG
CTGCTGCTCTGGATTAA

Library Parental gene expression (RPM)
SRP007412_brain 129 .27 RPM
SRP007412_cerebellum 119 .76 RPM
SRP007412_heart 575 .78 RPM
SRP007412_kidney 361 .03 RPM
SRP007412_liver 140 .94 RPM
SRP007412_testis 55 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000005024 ortholog_one2many 1 retrogene
retro_cfam_1781,
Choloepus hoffmanni ENSCHOG00000011229 ortholog_one2one 3 retrogenes
retro_chof_102, retro_chof_297, retro_chof_673,
Callithrix jacchus ENSCJAG00000020635 ortholog_one2many 7 retrogenes
retro_cjac_1079, retro_cjac_1293, retro_cjac_1381, retro_cjac_1636, retro_cjac_2506, retro_cjac_4190, retro_cjac_526,
Cavia porcellus ENSCPOG00000010523 ortholog_one2one 2 retrogenes
retro_cpor_422, retro_cpor_984,
Echinops telfairi ENSETEG00000010549 ortholog_one2one 1 retrogene
retro_etel_1406,
Felis catus ENSFCAG00000000196 ortholog_one2one 1 retrogene
retro_fcat_818,
Homo sapiens ENSG00000165629 ortholog_one2one 1 retrogene
retro_hsap_1415,
Gorilla gorilla ENSGGOG00000009719 ortholog_one2one 1 retrogene
retro_ggor_1094,
Macaca mulatta ENSMMUG00000009207 ortholog_one2one 1 retrogene
retro_mmul_2254,
Monodelphis domestica ENSMODG00000016720 ortholog_one2one 1 retrogene
retro_mdom_1287,
Nomascus leucogenys ENSNLEG00000011917 ortholog_one2one 1 retrogene
retro_nleu_1836,
Oryctolagus cuniculus ENSOCUG00000004642 ortholog_one2one 2 retrogenes
retro_ocun_1171, retro_ocun_363,
Otolemur garnettii ENSOGAG00000015242 ortholog_one2many 2 retrogenes
retro_ogar_1099, retro_ogar_2738,
Procavia capensis ENSPCAG00000004971 ortholog_one2one 1 retrogene
retro_pcap_99,
Pongo abelii ENSPPYG00000002076 ortholog_one2one 1 retrogene
retro_pabe_1170,
Pan troglodytes ENSPTRG00000002277 ortholog_one2one 1 retrogene
retro_ptro_968,
Pteropus vampyrus ENSPVAG00000006512 ortholog_one2one 3 retrogenes
retro_pvam_1466, retro_pvam_51, retro_pvam_530,
Ictidomys tridecemlineatus ENSSTOG00000026133 ortholog_one2one 1 retrogene
retro_itri_665,
Tupaia belangeri ENSTBEG00000011530 ortholog_one2one 4 retrogenes
retro_tbel_1763, retro_tbel_2023, retro_tbel_4384, retro_tbel_4406,
Tarsius syrichta ENSTSYG00000003035 ortholog_one2one 4 retrogenes
retro_tsyr_1268, retro_tsyr_1988, retro_tsyr_465, retro_tsyr_506,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_1122 87.82 56.93
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2. retro_mmus_2008 67.04 59.26
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3. retro_mmus_3451 68.31 60.74
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4. retro_mmus_3644 88.24 74.16
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Download FASTA sequences of all ENSMUSG00000025781 retrocopies