Parental gene:

Pabpc1, ENSMUSG00000022283

Aliases:Pabpc1, PABP, Pabp1, PabpI, Pabpl1, ePAB
Description:poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
Organism:Mouse (Mus musculus)
Coordinates:15:36595660..36608973(-)


>ENSMUSG00000022283
ATGAACCCCAGCGCCCCCAGCTACCCCATGGCCTCTCTGTACGTGGGGGACCTGCACCCCGACGTGACCGAGGCGATGCT
CTACGAGAAGTTCAGCCCGGCCGGGCCCATCCTCTCCATCCGGGTCTGCAGGGACATGATCACCCGCCGCTCCTTGGGCT
ACGCGTACGTGAACTTCCAGCAGCCGGCGGACGCGGAACGTGCTTTGGACACCATGAATTTTGATGTTATAAAGGGCAAG
CCAGTACGCATCATGTGGTCTCAGCGTGATCCATCACTTCGCAAAAGTGGAGTAGGCAACATATTCATTAAAAATTTGGA
CAAATCCATCGACAATAAAGCACTATATGATACGTTTTCTGCGTTTGGTAACATCCTTTCATGTAAGGTGGTTTGTGATG
AAAATGGCTCCAAGGGCTATGGATTTGTACACTTTGAAACACAGGAAGCAGCTGAAAGAGCTATTGAAAAAATGAATGGG
ATGCTTCTAAATGATCGTAAAGTGTTTGTTGGACGATTTAAATCTCGGAAGGAACGAGAAGCAGAGCTTGGAGCCAGGGC
AAAGGAGTTCACCAATGTTTACATCAAGAACTTTGGAGAAGACATGGATGATGAGCGCCTTAAGGAACTCTTTGGCAAGT
TTGGGCCTGCCTTAAGTGTGAAAGTAATGACAGATGAAAGTGGAAAATCCAAAGGATTTGGATTTGTAAGCTTTGAAAGG
CATGAAGATGCGCAGAAAGCTGTGGATGAGATGAATGGGAAGGAGCTCAATGGAAAACAGATTTATGTTGGACGAGCTCA
GAAAAAAGTGGAACGGCAGACGGAACTTAAGCGCAAATTTGAGCAGATGAAGCAAGATAGGATCACCAGATATCAGGGTG
TGAACCTTTATGTGAAAAATCTTGATGACGGGATTGATGATGAGCGTCTCCGGAAGGAGTTTTCTCCGTTTGGTACAATC
ACCAGTGCAAAAGTAATGATGGAGGGTGGGCGCAGCAAAGGGTTTGGTTTTGTATGTTTCTCATCCCCTGAAGAAGCCAC
TAAAGCAGTTACAGAGATGAATGGTAGAATTGTGGCCACGAAGCCACTGTATGTAGCTTTAGCTCAGCGCAAAGAAGAGC
GCCAGGCTCACCTCACTAACCAGTATATGCAGAGGATGGCAAGTGTACGAGCTGTGCCCAACCCCGTGATCAACCCCTAC
CAGCCAGCACCTCCTTCAGGTTACTTCATGGCAGCTATCCCACAGACTCAGAACCGTGCTGCATACTATCCTCCTAGCCA
AATTGCTCAACTAAGACCAAGTCCTCGCTGGACTGCTCAGGGTGCCAGACCTCATCCATTCCAGAATATGCCCGGTGCTA
TCCGCCCAGCTGCTCCTAGACCACCATTTAGTACGATGAGACCAGCTTCCTCACAGGTTCCACGAGTCATGTCAACACAG
CGTGTTGCTAACACATCAACACAGACAATGGGTCCACGTCCTGCAGCTGCTGCTGCTGCAGCCACTCCTGCTGTCCGCAC
CGTTCCCCAGTATAAATATGCTGCGGGAGTCCGCAATCCCCAGCAACATCTTAATGCACAGCCACAAGTTACCATGCAAC
AGCCTGCTGTTCATGTGCAAGGTCAAGAACCTTTAACTGCTTCCATGTTGGCATCTGCGCCCCCGCAAGAGCAGAAGCAA
ATGTTGGGTGAACGGCTGTTTCCTCTTATCCAAGCCATGCACCCTTCTCTTGCTGGTAAAATCACTGGCATGCTGTTGGA
GATTGATAACTCAGAATTACTTCACATGCTCGAGTCTCCAGAGTCTCTCCGCTCAAAGGTTGATGAAGCTGTAGCTGTAC
TACAAGCCCACCAAGCGAAAGAGGCTGCCCAGAAAGCAGTGAACAGTGCCACTGGTGTTCCAACTGTCTAA

Library Parental gene expression (RPM)
SRP007412_brain 112 .73 RPM
SRP007412_cerebellum 87 .88 RPM
SRP007412_heart 95 .29 RPM
SRP007412_kidney 201 .93 RPM
SRP007412_liver 223 .25 RPM
SRP007412_testis 1753 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000348 possible_ortholog 1 retrogene
retro_amel_1650,
Choloepus hoffmanni ENSCHOG00000008178 possible_ortholog 1 retrogene
retro_chof_2531,
Callithrix jacchus ENSCJAG00000015833 ortholog_one2one 5 retrogenes
retro_cjac_1586, retro_cjac_2571, retro_cjac_3218, retro_cjac_4039, retro_cjac_41,
Cavia porcellus ENSCPOG00000012917 possible_ortholog 1 retrogene
retro_cpor_1324,
Dasypus novemcinctus ENSDNOG00000008718 possible_ortholog 2 retrogenes
retro_dnov_1530, retro_dnov_2259,
Felis catus ENSFCAG00000001874 possible_ortholog 1 retrogene
retro_fcat_1927,
Homo sapiens ENSG00000070756 possible_ortholog 1 retrogene
retro_hsap_88,
Gorilla gorilla ENSGGOG00000006785 possible_ortholog 1 retrogene
retro_ggor_1986,
Myotis lucifugus ENSMLUG00000012245 possible_ortholog 1 retrogene
retro_mluc_579,
Macaca mulatta ENSMMUG00000017786 ortholog_one2one 2 retrogenes
retro_mmul_1462, retro_mmul_895,
Monodelphis domestica ENSMODG00000006222 ortholog_many2many 4 retrogenes
retro_mdom_123, retro_mdom_1867, retro_mdom_216, retro_mdom_43,
Mus musculus ENSMUSG00000011257 within_species_paralog 7 retrogenes
retro_mmus_2006, retro_mmus_2326, retro_mmus_2327, retro_mmus_798, retro_mmus_801, retro_mmus_803, retro_mmus_805,
Mus musculus ENSMUSG00000040043 other_paralog 1 retrogene
retro_mmus_1530,
Nomascus leucogenys ENSNLEG00000003142 ortholog_one2one 3 retrogenes
retro_nleu_221, retro_nleu_2412, retro_nleu_611,
Oryctolagus cuniculus ENSOCUG00000004354 possible_ortholog 1 retrogene
retro_ocun_13,
Pongo abelii ENSPPYG00000018790 possible_ortholog 3 retrogenes
retro_pabe_2373, retro_pabe_68, retro_pabe_854,
Pteropus vampyrus ENSPVAG00000016640 ortholog_one2one 2 retrogenes
retro_pvam_10, retro_pvam_855,
Rattus norvegicus ENSRNOG00000008639 ortholog_one2one 3 retrogenes
retro_rnor_1228, retro_rnor_2321, retro_rnor_265,
Sarcophilus harrisii ENSSHAG00000011267 ortholog_many2many 1 retrogene
retro_shar_24,
Sus scrofa ENSSSCG00000006063 ortholog_one2one 2 retrogenes
retro_sscr_1153, retro_sscr_1205,
Ictidomys tridecemlineatus ENSSTOG00000016395 possible_ortholog 2 retrogenes
retro_itri_139, retro_itri_48,
Tarsius syrichta ENSTSYG00000004229 possible_ortholog 2 retrogenes
retro_tsyr_1743, retro_tsyr_273,
Tursiops truncatus ENSTTRG00000004689 ortholog_one2one 2 retrogenes
retro_ttru_1050, retro_ttru_1812,
Vicugna pacos ENSVPAG00000003865 ortholog_one2one 4 retrogenes
retro_vpac_14, retro_vpac_384, retro_vpac_620, retro_vpac_649,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_102 80.35 100.00
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2. retro_mmus_2164 92.25 84.91
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Download FASTA sequences of all ENSMUSG00000022283 retrocopies