Parental gene:

Rps27a, ENSMUSG00000020460

Aliases:Rps27a, 0610006J14Rik, Uba52, Ubb, Ubc
Description:ribosomal protein S27A [Source:MGI Symbol;Acc:MGI:1925544]
Organism:Mouse (Mus musculus)
Coordinates:11:29545845..29548109(-)


>ENSMUSG00000020460
ATGCAGATCTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGACACTATAGAAAATGTAAA
GGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCC
GGACTTTGTCTGACTACAACATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGTGCTAAGAAAAGG
AAGAAGAAGTCTTACACCACTCCCAAGAAGAACAAGCATAAGAGGAAGAAGGTTAAGTTGGCTGTGCTGAAATACTATAA
GGTGGATGAAAATGGCAAAATTAGCCGACTTCGTCGAGAGTGTCCTTCTGATGAATGTGGTGCTGGAGTTTTCATGGGAA
GCCACTTTGACAGGCATTACTGTGGCAAGTGTTGTCTGACTTACTGCTTCAACAAACCAGAAGACAAGTAG

Library Parental gene expression (RPM)
SRP007412_brain 54 .37 RPM
SRP007412_cerebellum 28 .27 RPM
SRP007412_heart 37 .01 RPM
SRP007412_kidney 40 .75 RPM
SRP007412_liver 49 .78 RPM
SRP007412_testis 26 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004017 possible_ortholog 5 retrogenes
retro_amel_1565, retro_amel_175, retro_amel_598, retro_amel_661, retro_amel_844,
Canis familiaris ENSCAFG00000023471 possible_ortholog 3 retrogenes
retro_cfam_1048, retro_cfam_640, retro_cfam_81,
Callithrix jacchus ENSCJAG00000010052 possible_ortholog 5 retrogenes
retro_cjac_200, retro_cjac_229, retro_cjac_344, retro_cjac_74, retro_cjac_88,
Loxodonta africana ENSLAFG00000023133 possible_ortholog 2 retrogenes
retro_lafr_1122, retro_lafr_185,
Macropus eugenii ENSMEUG00000008917 ortholog_one2one 13 retrogenes
retro_meug_107, retro_meug_1184, retro_meug_1460, retro_meug_1514, retro_meug_1544, retro_meug_1657, retro_meug_183, retro_meug_1866, retro_meug_209, retro_meug_521, retro_meug_594, retro_meug_937, retro_meug_94,
Myotis lucifugus ENSMLUG00000017064 possible_ortholog 10 retrogenes
retro_mluc_1201, retro_mluc_1255, retro_mluc_1298, retro_mluc_1646, retro_mluc_1730, retro_mluc_1865, retro_mluc_1867, retro_mluc_2264, retro_mluc_37, retro_mluc_380,
Myotis lucifugus ENSMLUG00000029449 possible_ortholog 1 retrogene
retro_mluc_1585,
Macaca mulatta ENSMMUG00000015563 possible_ortholog 8 retrogenes
retro_mmul_1198, retro_mmul_193, retro_mmul_2189, retro_mmul_222, retro_mmul_2470, retro_mmul_282, retro_mmul_606, retro_mmul_73,
Monodelphis domestica ENSMODG00000001819 possible_ortholog 3 retrogenes
retro_mdom_1367, retro_mdom_1751, retro_mdom_205,
Oryctolagus cuniculus ENSOCUG00000003613 possible_ortholog 10 retrogenes
retro_ocun_1087, retro_ocun_1163, retro_ocun_1209, retro_ocun_1259, retro_ocun_1268, retro_ocun_1339, retro_ocun_164, retro_ocun_288, retro_ocun_381, retro_ocun_851,
Pongo abelii ENSPPYG00000025871 possible_ortholog 1 retrogene
retro_pabe_117,
Pan troglodytes ENSPTRG00000011928 possible_ortholog 1 retrogene
retro_ptro_32,
Rattus norvegicus ENSRNOG00000004426 ortholog_one2many 2 retrogenes
retro_rnor_117, retro_rnor_161,
Ictidomys tridecemlineatus ENSSTOG00000009566 possible_ortholog 5 retrogenes
retro_itri_1583, retro_itri_1765, retro_itri_26, retro_itri_635, retro_itri_962,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_306 91.59 68.59
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2. retro_mmus_318 81.08 93.59
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3. retro_mmus_1074 91.08 100.00
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4. retro_mmus_1268 93.59 100.00
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5. retro_mmus_1440 66.88 99.36
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6. retro_mmus_1441 72.96 100.00
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7. retro_mmus_1815 91.67 98.72
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8. retro_mmus_1917 59.33 93.59
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9. retro_mmus_2043 87.50 84.62
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10. retro_mmus_2092 65.88 52.56
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11. retro_mmus_2098 91.53 75.64
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12. retro_mmus_2449 78.63 83.33
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13. retro_mmus_2514 95.51 100.00
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14. retro_mmus_2785 99.36 100.00
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15. retro_mmus_2801 93.91 73.72
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16. retro_mmus_2931 94.23 100.00
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17. retro_mmus_3234 97.24 92.95
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18. retro_mmus_3292 100.00 100.00
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19. retro_mmus_3391 99.36 100.00
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Download FASTA sequences of all ENSMUSG00000020460 retrocopies