Parental gene:

AP1S2, ENSMODG00000017197

Aliases:None
Description:adaptor-related protein complex 1, sigma 2 subunit [Source:HGNC Symbol;Acc:560]
Organism:Opossum (Monodelphis domestica)
Coordinates:7:24197668..24227704(+)


>ENSMODG00000017197
ATGATGCAGTTTATGTTGCTTTTTAGTCGTCAGGGGAAGCTCCGACTTCAGAAATGGTATGTCCCACTATCGGACAAAGA
AAAGAAAAAAATCACAAGGGAACTTGTTCAAACAGTTTTAGCCCGTAAACCCAAAATGTGCAGCTTTTTGGAGTGGCGAG
ATCTCAAGATTGTCTACAAAAGATATGCTAGCCTGTATTTCTGCTGTGCTATTGAAGATCAGGACAATGAACTAATTACC
CTGGAAATAATTCATCGTTACGTTGAACTACTTGACAAATATTTTGGCAGCGTGTGTGAACTTGATATCATCTTTAATTT
TGAGAAGGCTTATTTTATTTTGGACGAGTTTCTTTTGGGAGGAGAAGTTCAGGAAACGTCCAAGAAAAATGTACTTAAAG
CCATCGAGCAGGCAGATCTGCTACAAGAGGAAGCTGAAACCCCACGTAGTGTTCTTGAAGAAATTGGACTGACATAA

Library Parental gene expression (RPM)
SRP007412_brain 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020420 ortholog_one2one 1 retrogene
retro_btau_1308,
Callithrix jacchus ENSCJAG00000004393 ortholog_one2many 1 retrogene
retro_cjac_2312,
Dasypus novemcinctus ENSDNOG00000013888 ortholog_one2one 1 retrogene
retro_dnov_1786,
Homo sapiens ENSG00000182287 ortholog_one2one 1 retrogene
retro_hsap_1849,
Macaca mulatta ENSMMUG00000014055 ortholog_one2one 1 retrogene
retro_mmul_1716,
Monodelphis domestica ENSMODG00000017579 within_species_paralog 1 retrogene
retro_mdom_1774,
Monodelphis domestica ENSMODG00000021198 within_species_paralog 1 retrogene
retro_mdom_1427,
Otolemur garnettii ENSOGAG00000011342 ortholog_one2many 3 retrogenes
retro_ogar_2038, retro_ogar_265, retro_ogar_3453,
Procavia capensis ENSPCAG00000000733 ortholog_one2one 1 retrogene
retro_pcap_386,
Pteropus vampyrus ENSPVAG00000010218 ortholog_one2one 1 retrogene
retro_pvam_783,
Sorex araneus ENSSARG00000000117 ortholog_one2one 1 retrogene
retro_sara_575,
Sarcophilus harrisii ENSSHAG00000013119 ortholog_one2one 2 retrogenes
retro_shar_651, retro_shar_690,
Sus scrofa ENSSSCG00000012142 ortholog_one2one 1 retrogene
retro_sscr_998,
Ictidomys tridecemlineatus ENSSTOG00000008517 ortholog_one2many 1 retrogene
retro_itri_131,
Tupaia belangeri ENSTBEG00000008834 ortholog_one2one 2 retrogenes
retro_tbel_2173, retro_tbel_4575,
Tarsius syrichta ENSTSYG00000005290 ortholog_one2one 2 retrogenes
retro_tsyr_1953, retro_tsyr_854,
Vicugna pacos ENSVPAG00000007642 ortholog_one2one 1 retrogene
retro_vpac_596,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_903 60.55 68.35
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2. retro_mdom_1189 70.41 62.03
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3. retro_mdom_1329 96.82 99.37
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4. retro_mdom_1441 90.51 99.37
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5. retro_mdom_1470 85.00 62.66
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6. retro_mdom_1616 94.94 99.37
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7. retro_mdom_1987 96.82 99.37
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Download FASTA sequences of all ENSMODG00000017197 retrocopies