Parental gene:

AP1S2, ENSCJAG00000004393

Aliases:None
Description:adaptor-related protein complex 1, sigma 2 subunit [Source:HGNC Symbol;Acc:560]
Organism:Marmoset (Callithrix jacchus)
Coordinates:X:14002552..14032843(-)


>ENSCJAG00000004393
CCAGCCGGGTCCCCTCCCCACAGCACCACGGCTTCTCTTCCTCAGCAAGGCGACAGGGGCTTCCCCTTAGCCGCCGCCGC
CGGCCAAGCTCCGCCGCGCCCGCGGCCCGCGGCCGCCATGCAGTTTATGTTGCTTTTTAGTCGTCAGGGAAAGCTTCGAC
TGCAGAAATGGTATGTCCCACTGTCAGACAAAGAGAAGAAAAAGATCACCAGAGAACTTGTTCAGACCGTTTTAGCACGG
AAACCTAAAATGTGCAGCTTCCTTGAGTGGCGAGATCTGAAGATTGTTTACAAAAGATATGCTAGTCTGTATTTTTGCTG
TGCTATTGAGGATCAGGACAATGAACTAATTACCCTGGAAATAATTCATCGTTATGTGGAATTACTTGACAAGTATTTTG
GCAGTGTCTGTGAACTAGATATCATCTTTAATTTTGAGAAGGCTTATTTTATTTTGGATGAGTTTCTTTTGGGAGGGGAA
GTTCAGGAAACATCCAAGAAAAATGTCCTTAAAGCAATTGAGCAGGCCGATCTACTGCAGGAGAAAACAGAGACTATGTA
TCACAGCAAGAGTTTCATGGGGTATAAGAAAGCGTACTAG

Library Parental gene expression (RPM)
SRP051959_colon 12 .56 RPM
SRP051959_heart 18 .86 RPM
SRP051959_kidney 12 .82 RPM
SRP051959_liver 7 .67 RPM
SRP051959_lung 28 .61 RPM
SRP051959_lymph_node 23 .26 RPM
SRP051959_skeletal_muscle 5 .70 RPM
SRP051959_spleen 50 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020420 possible_ortholog 1 retrogene
retro_btau_1308,
Callithrix jacchus ENSCJAG00000005786 within_species_paralog 1 retrogene
retro_cjac_2742,
Callithrix jacchus ENSCJAG00000012352 within_species_paralog 2 retrogenes
retro_cjac_3187, retro_cjac_3903,
Dasypus novemcinctus ENSDNOG00000013888 ortholog_one2many 1 retrogene
retro_dnov_1786,
Homo sapiens ENSG00000182287 ortholog_one2one 1 retrogene
retro_hsap_1849,
Macaca mulatta ENSMMUG00000014055 ortholog_one2one 1 retrogene
retro_mmul_1716,
Monodelphis domestica ENSMODG00000017197 ortholog_one2many 7 retrogenes
retro_mdom_1189, retro_mdom_1329, retro_mdom_1441, retro_mdom_1470, retro_mdom_1616, retro_mdom_1987, retro_mdom_903,
Otolemur garnettii ENSOGAG00000011342 ortholog_one2one 3 retrogenes
retro_ogar_2038, retro_ogar_265, retro_ogar_3453,
Procavia capensis ENSPCAG00000000733 ortholog_one2many 1 retrogene
retro_pcap_386,
Pteropus vampyrus ENSPVAG00000010218 possible_ortholog 1 retrogene
retro_pvam_783,
Sorex araneus ENSSARG00000000117 possible_ortholog 1 retrogene
retro_sara_575,
Sarcophilus harrisii ENSSHAG00000013119 ortholog_one2many 2 retrogenes
retro_shar_651, retro_shar_690,
Sus scrofa ENSSSCG00000012142 possible_ortholog 1 retrogene
retro_sscr_998,
Ictidomys tridecemlineatus ENSSTOG00000008517 possible_ortholog 1 retrogene
retro_itri_131,
Tupaia belangeri ENSTBEG00000008834 possible_ortholog 2 retrogenes
retro_tbel_2173, retro_tbel_4575,
Tarsius syrichta ENSTSYG00000005290 possible_ortholog 2 retrogenes
retro_tsyr_1953, retro_tsyr_854,
Vicugna pacos ENSVPAG00000007642 possible_ortholog 1 retrogene
retro_vpac_596,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2312 97.39 73.25
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Download FASTA sequences of all ENSCJAG00000004393 retrocopies