Parental gene:

PAFAH1B1, ENSMODG00000010776

Aliases:None
Description:platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) [Source:HGNC Symbol;Acc:8574]
Organism:Opossum (Monodelphis domestica)
Coordinates:2:518133084..518168510(+)


>ENSMODG00000010776
ATGGTGCTGTCACAGAGACAACGAGATGAACTAAATCGAGCTATAGCAGATTATCTTCGTTCAAATGGCTATGAAGAGGC
ATATTCGGTTTTTAAAAAAGAAGCTGAATTAGATATGAATGAAGAGTTAGATAAGAAATATGCTGGTCTTTTGGAAAAAA
AATGGACATCAGTTATCAGATTACAAAAGAAGGTTATGGAATTAGAATCAAAGCTAAATGAAGCAAAGGAAGAATTTACA
TCAGGTGGGCCTCTTGGTCAGAAACGAGACCCAAAAGAATGGATTCCTCGACCTCCAGAAAAGTATGCATTGAGTGGACA
TAGGAGTCCGGTCACTCGTGTCATTTTCCACCCAGTTTTCAGTGTTATGGTCTCTGCTTCTGAGGATGCTACAATAAAGG
TGTGGGATTATGAAACTGGAGATTTTGAACGAACTCTTAAGGGACACACAGACTCTGTACAAGATATTTCCTTTGACCAC
AGTGGCAAGCTTTTGGCTTCTTGTTCTGCTGATATGACCATTAAACTTTGGGATTTCCAGGGTTTCGAGTGTATCAGAAC
CATGCATGGCCATGATCACAATGTCTCTTCAGTAGCCATCATGCCTAATGGAGATCACATAGTATCTGCCTCAAGGGACA
AAACTATAAAAATGTGGGAAGTGCAAACTGGCTACTGTGTGAAGACTTTCACAGGACACAGAGAATGGGTGCGCATGGTG
CGGCCAAATCAGGATGGCACCTTAATTGCCAGTTGTTCTAATGACCAGACAGTTCGTGTATGGGTAGTAGCCACAAAGGA
ATGCAAAGCTGAGCTCCGAGAACATGAGCATGTGGTTGAGTGCATTTCCTGGGCCCCAGAAAGCTCTTATTCCTCTATCT
CTGAAGCTACAGGATCTGAGACTAAAAAAAGTAGCAAACCTGGGCCTATCTTGCTGTCTGGATCCAGAGACAAGACCATT
AAGATGTGGGACGTTATCACTGGCATGTGCCTTATGACCCTTGTGGGCCATGATAATTGGGTACGTGGAGTTCTCTTCCA
TTCTGGGGGAAAGTTTATTTTGAGTTGTGCTGATGACAAGACCCTACGTGTGTGGGACTATAAGAACAAGCGATGCATGA
AGACCCTCAACGCGCATGAACACTTTGTTACCTCCTTGGATTTCCACAAGACGGCACCATACGTGGTTACTGGAAGTGTA
GATCAAACAGTAAAAGTGTGGGAGTGCCGTTGA

Library Parental gene expression (RPM)
SRP007412_brain 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000007168 ortholog_one2one 2 retrogenes
retro_hsap_2144, retro_hsap_2292,
Monodelphis domestica ENSMODG00000003439 within_species_paralog 1 retrogene
retro_mdom_965,
Mus musculus ENSMUSG00000020745 ortholog_one2one 1 retrogene
retro_mmus_2988,
Pongo abelii ENSPPYG00000007796 ortholog_one2one 1 retrogene
retro_pabe_1932,
Pan troglodytes ENSPTRG00000008551 ortholog_one2one 1 retrogene
retro_ptro_1569,
Sorex araneus ENSSARG00000002826 ortholog_one2one 4 retrogenes
retro_sara_266, retro_sara_275, retro_sara_364, retro_sara_588,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_441 63.22 62.44
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2. retro_mdom_460 76.61 53.17
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Download FASTA sequences of all ENSMODG00000010776 retrocopies