Parental gene:

PAFAH1B1, ENSPPYG00000007796

Aliases:PAFAH1B1, LIS1, PAFAHA
Description:platelet-activating factor acetylhydrolase IB subunit alpha [Source:RefSeq peptide;Acc:NP_001124853]
Organism:Orangutan (Pongo abelii)
Coordinates:17:2499851..2594263(+)


>ENSPPYG00000007796
ATGGTGCTGTCCCAGAGACAACGAGATGAACTAAATCGAGCTATAGCAGATTATCTTCGTTCAAATGGCTATGAAGAGGC
ATATTCAGTTTTTAAAAAGGAAGCTGAATTAGATATGAATGAAGAATTAGATAAAAAGTATGCTGGTCTTTTGGAAAAAA
AATGGACATCTGTTATTAGATTACAAAAGAAGGTTATGGAATTAGAATCAAAGCTAAATGAAGCAAAAGAAGAATTTACG
TCAGGTGGACCTCTTGGTCAGAAACGAGACCCAAAAGAATGGATTCCCCGTCCGCCAGAAAAATACGCATTGAGTGGTCA
CAGGAGTCCAGTCACTCGAGTCATTTTCCATCCTGTGTTCAGTGTTATGGTCTCTGCTTCAGAGGATGCTACAATTAAGG
TGTGGGATTATGAGACTGGAGATTTTGAACGAACTCTTAAAGGACATACAGACTCTGTACAGGACATTTCATTCGACCAC
AGCGGCAAGCTTCTGGCTTCCTGTTCTGCAGATATGACCATTAAACTATGGGATTTTCAGGGCTTTGAATGCATCAGAAC
CATGCACGGCCATGACCACAATGTTTCTTCAGTAGCCATCATGCCCAATGGAGATCATATAGTGTCTGCCTCAAGGGATA
AAACTATAAAAATGTGGGAAGTGCAAACTGGCTACTGTGTGAAGACATTCACAGGACACAGAGAATGGGTACGTATGGTG
CGACCAAATCAAGATGGCACTCTGATAGCCAGCTGTTCCAATGACCAGACTGTGCGTGTATGGGTCGTAGCAACAAAGGA
ATGCAAGGCTGAGCTCCGAGAGCATGAACATGTGGTAGAATGCATTTCCTGGGCTCCGGAAAGCTCATATTCCTCCATCT
CTGAAGCAACAGGATCTGAGACTAAAAAAAGTGGTAAACCTGGGCCATTCTTGCTGTCTGGATCCAGAGACAAGACTATT
AAGATGTGGGATGTCAGTACTGGCATGTGCCTTATGACCCTCGTGGGTCATGATAACTGGGTACGTGGAGTTCTGTTCCA
TTCTGGGGGGAAGTTTATTTTGAGTTGTGCTGATGACAAGACCCTACGTGTATGGGATTACAAGAACAAGCGATGCATGA
AGACCCTCAATGCGCATGAACACTTTGTTACCTCCTTGGATTTCCACAAGACGGCACCCTATGTCGTCACTGGCAGCGTA
GATCAAACAGTAAAAGTGTGGGAGTGCCGTTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 318 .97 RPM
SRP007412_cerebellum 301 .21 RPM
SRP007412_heart 86 .91 RPM
SRP007412_kidney 94 .70 RPM
SRP007412_liver 53 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000007168 ortholog_one2one 2 retrogenes
retro_hsap_2144, retro_hsap_2292,
Monodelphis domestica ENSMODG00000010776 ortholog_one2one 2 retrogenes
retro_mdom_441, retro_mdom_460,
Mus musculus ENSMUSG00000020745 ortholog_one2one 1 retrogene
retro_mmus_2988,
Pongo abelii ENSPPYG00000014001 other_paralog 2 retrogenes
retro_pabe_320, retro_pabe_321,
Pongo abelii ENSPPYG00000019140 within_species_paralog 1 retrogene
retro_pabe_274,
Pan troglodytes ENSPTRG00000008551 ortholog_one2one 1 retrogene
retro_ptro_1569,
Sorex araneus ENSSARG00000002826 ortholog_one2one 4 retrogenes
retro_sara_266, retro_sara_275, retro_sara_364, retro_sara_588,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1932 87.46 75.85
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Download FASTA sequences of all ENSPPYG00000007796 retrocopies