Parental gene:

SMU1, ENSMODG00000003439

Aliases:None
Description:smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) [Source:HGNC Symbol;Acc:18247]
Organism:Opossum (Monodelphis domestica)
Coordinates:6:33433053..33455973(-)


>ENSMODG00000003439
ATGTCTATTGAGATCGAGTCTTCCGATGTTATACGTCTCATCATGCAGTACTTGAAGGAAAATAGTTTGCATCGAGCATT
AGCCACTTTGCAGGAGGAGACCACTGTATCCTTGAATACTGTGGACAGCATAGAGAGTTTTGTAGCAGATATTAACAGTG
GACATTGGGATACTGTTTTGCAAGCTATACAGTCCCTGAAATTGCCAGACAAAACACTGATTGACCTCTATGAACAGGTT
GTTCTGGAATTGATAGAACTTCGTGAATTGGGTGCTGCCAGATCTCTTCTGAGACAGACTGACCCCATGATCATGTTAAA
ACAAACTCAGCCAGAGAGATACATTCATCTTGAGAACCTTTTGGCCAGATCCTATTTTGATCCTCGTGAGGCATACCCAG
ATGGAAGCAGCAAGGAGAAAAGAAGAGCAGCAATTGCACAGGCTTTAGCTGGAGAAGTTAGTGTTGTACCTCCATCTCGA
CTTATGGCACTGTTGGGACAGGCTTTGAAGTGGCAACAGCACCAAGGTTTGCTTCCTCCTGGTATGACAATCGATTTATT
TAGAGGCAAAGCAGCTGTAAAAGATGTGGAAGAAGAGAAGTTTCCAACACAGTTAAGCAGGCATATTAAATTTGGCCAGA
AATCACATGTGGAATGTGCTCGATTTTCTCCAGATGGCCAGTATTTGGTCACTGGCTCTGTTGATGGTTTCATTGAAGTA
TGGAACTTTACAACTGGAAAGATTAGAAAGGATCTCAAGTACCAGGCACAAGATAATTTTATGCTGATGGATGATGCCGT
ACTATGTATGTGTTTCAGCAGAGATACAGAAATGTTAGCAACTGGGGCCCAAGATGGAAAAATTAAGGTATGGAAGATAC
AGAGTGGACAGTGTTTAAGGAGATTTGAAAGGGCACACAGTAAAGGTGTCACCTGCCTAAGCTTCTCCAAGGATAGCAGT
CAGATCCTCAGTGCTTCCTTTGACCAAACAATCAGAATTCATGGCTTAAAATCTGGGAAAACCTTGAAGGAATTTCGTGG
TCATTCTTCATTTGTTAATGAAGCTACTTTTACTCAAGATGGACATTATATAATCAGTGCATCATCTGATGGCACTGTGA
AGATTTGGAATATGAAGACCACTGAGTGTTCAAATACCTTCAAATCTCTTGGCAGCACTGCAGGGACAGACATCACTGTC
AACAGTGTCGTCCTTCTTCCTAAAAATCCAGAGCACTTTGTCGTGTGTAACAGGTCAAATACAGTGGTCATCATGAACAT
GCAGGGACAGATTGTCAGGAGTTTCAGCTCTGGTAAGAGAGAAGGTGGTGACTTCGTCTGCTGTGCCCTCTCGCCACGTG
GTGAATGGATCTACTGTGTGGGGGAAGATTTTGTGCTGTACTGTTTCAGCACAGTAACTGGCAAACTGGAACGAACACTG
ACAGTTCATGAAAAGGATGTCATTGGCATTGCTCACCATCCCCATCAGAATCTGATTGCTACCTACAGCGAAGATGGGCT
CTTAAAGCTCTGGAAGCCCTAA

Library Parental gene expression (RPM)
SRP007412_brain 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000006212 ortholog_one2one 1 retrogene
retro_cpor_819,
Dipodomys ordii ENSDORG00000006011 possible_ortholog 2 retrogenes
retro_dord_126, retro_dord_137,
Echinops telfairi ENSETEG00000007953 possible_ortholog 1 retrogene
retro_etel_1686,
Homo sapiens ENSG00000122692 ortholog_one2one 1 retrogene
retro_hsap_457,
Gorilla gorilla ENSGGOG00000014802 ortholog_one2one 1 retrogene
retro_ggor_440,
Myotis lucifugus ENSMLUG00000016097 ortholog_one2one 1 retrogene
retro_mluc_213,
Monodelphis domestica ENSMODG00000010776 within_species_paralog 2 retrogenes
retro_mdom_441, retro_mdom_460,
Ochotona princeps ENSOPRG00000011389 ortholog_one2one 2 retrogenes
retro_opri_19, retro_opri_741,
Pongo abelii ENSPPYG00000019140 ortholog_one2one 1 retrogene
retro_pabe_274,
Pan troglodytes ENSPTRG00000020853 ortholog_one2one 1 retrogene
retro_ptro_344,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_965 93.59 76.02
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Download FASTA sequences of all ENSMODG00000003439 retrocopies