Parental gene:

MMU.3225, ENSMMUG00000013098

Aliases:None
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:3:171941358..172066274(+)


>ENSMMUG00000013098
ATGGCCACCTTTGTGGAGCTCAGTACCAAAGCCAAGATGCCCATTGTGGGCCTGGGCACTTGGAAGTCTCCTCTCGGCAA
AGTGAAAGAAGCAGTGAAGGTGGCCATTGATGCAGGATATCGCCACATTGACTGTGCCTATGTCTATCAGAATGAACATG
AGGTGGGGGAAGCCATCCAAGAGAAGATCCAAGAGCAGGCTGTGAAGCGGGAGGACCTGTTCATCGTCAGCAAGTTGTGG
CCCACTTTCTTTGAGAGACCGCTTGTGAGGAAAGCCTTTGAGAAGACCCTCAAGGACCTGAAGCTGAGCTATCTGGACGT
CTATCTTATTCACTGGCCACAGGGATTCAAGTCTGGGGATGACATTTTACCCAAAGATGATAAAGATAATGTCATCGGTG
GAAAAGCAACGTTCTTGGATGCCTGGGAGGCCATGGAGGAGCTGGTGGATGAGGGGCTGGTGAAAGCCCTTGGCATCTCC
AATTTCAACCACTTCCAGATTGAGAGGCTCTTGAACAAACCTGGACTGAAATATAAACCAGTGACTAACCAGGTTGAGTG
TCACCCGTACCTCACGCAGGAGAAACTGATCCAGTACTGCCACTCCAAGGGCATCACCGTTACGGCCTACAGCCCCCTGG
GCTCTCCGGATAGACCTTGGGCCAAGCCAGAGGACCCTTCCCTGCTGGAGGATCCCAAGATTAAGGAGATTGCTGCAAAG
CACAAAAAAACTGCAGCCCAGGTTCTGATCCGTTTCCATATCCAGAGGAATGTGATTGTGATCCCCAAGTCTGTGACACC
GGCACGCATTGTTGAGAACATTCAGGTCTTTGACTTTAAATTGAGTGATGAGGAGATGGCAACGATACTCAGCTTCAACA
GAAACTGGAGGGCCTGCAACATGTTGCAATCCTCTCATTTGGAGGACTATCCCTTTGATGCAGAATATTGA

Library Parental gene expression (RPM)
SRP007412_brain 4 .37 RPM
SRP007412_brain_prefrontal_cortex 4 .13 RPM
SRP007412_cerebellum 2 .71 RPM
SRP007412_heart 29 .62 RPM
SRP007412_kidney 8 .57 RPM
SRP007412_liver 48 .77 RPM
SRP007412_testis 6 .56 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000166 ortholog_one2many 1 retrogene
retro_chof_400,
Callithrix jacchus ENSCJAG00000012250 ortholog_one2many 1 retrogene
retro_cjac_3038,
Erinaceus europaeus ENSEEUG00000004422 ortholog_many2many 1 retrogene
retro_eeur_681,
Echinops telfairi ENSETEG00000006005 ortholog_one2many 3 retrogenes
retro_etel_1055, retro_etel_1643, retro_etel_748,
Homo sapiens ENSG00000198074 ortholog_many2many 1 retrogene
retro_hsap_581,
Mus musculus ENSMUSG00000029762 ortholog_many2many 1 retrogene
retro_mmus_627,
Mus musculus ENSMUSG00000052131 ortholog_many2many 1 retrogene
retro_mmus_2860,
Mus musculus ENSMUSG00000061758 ortholog_many2many 1 retrogene
retro_mmus_1490,
Nomascus leucogenys ENSNLEG00000013088 ortholog_one2many 1 retrogene
retro_nleu_801,
Pongo abelii ENSPPYG00000018018 ortholog_one2many 1 retrogene
retro_pabe_606,
Pan troglodytes ENSPTRG00000019718 ortholog_many2many 1 retrogene
retro_ptro_428,
Rattus norvegicus ENSRNOG00000009734 ortholog_many2many 3 retrogenes
retro_rnor_2380, retro_rnor_2588, retro_rnor_657,
Sorex araneus ENSSARG00000001396 ortholog_one2many 1 retrogene
retro_sara_608,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1357 57.58 51.27
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2. retro_mmul_2455 86.75 100.00
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Download FASTA sequences of all ENSMMUG00000013098 retrocopies