Parental gene:

MMU.17961, ENSMMUG00000003073

Aliases:None
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:11:53790225..53793304(-)


>ENSMMUG00000003073
GGGTCTGGAACAGAATCTGATAGTGATGAATCAGTACCAGAGCTTGAAGAACAGGATTCCACCCAGGCAACCACACAACA
AGCCCAGCTGGCGGCAGCAGCTGAAATTGATGAAGAACCAGTCAGTAAAGCAAAACAGAGTCGGAGTGAAAAGAAGGCAC
GGAAGGCTATGTCCAAACTGGGTCTTCGACAGGTTACAGGAGTTACTAGAGTCACTATCCGGAAATCTAAGAATATCCTC
TTTGTCATCACAAAACCAGATGTCTACAAGAGCCCTGCTTCAGATACTTACATAGTTTTTGGGGAAGCCAAGATCGAAGA
TTTATCCCAGCAAGCACAACTAGCAGCTGCTGAGAAATTCAAAGTTCAAGGTGAAGCTGTCTCAAACATTCAAGAAAACA
CACAGACTCCAACCGTACAAGAGGAGAGTGAAGAGGAAGAGGTCGATGAAACAGGTGTAGAAGTTAAAGACATAGAATTG
GTCATGTCACAAGCAAATGTGTCGAGAGCTAAGGCAGTCCGAGCCCTGAAGAACAACAGTAATGATATTGTAAATGCGAT
TATGGAATTAACAATGTAA

Library Parental gene expression (RPM)
SRP007412_brain 132 .22 RPM
SRP007412_brain_prefrontal_cortex 89 .72 RPM
SRP007412_cerebellum 157 .30 RPM
SRP007412_heart 188 .14 RPM
SRP007412_kidney 220 .18 RPM
SRP007412_liver 130 .11 RPM
SRP007412_testis 175 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004175 possible_ortholog 3 retrogenes
retro_amel_1725, retro_amel_1821, retro_amel_643,
Canis familiaris ENSCAFG00000000141 possible_ortholog 8 retrogenes
retro_cfam_1502, retro_cfam_1561, retro_cfam_1884, retro_cfam_1913, retro_cfam_2096, retro_cfam_2169, retro_cfam_710, retro_cfam_974,
Callithrix jacchus ENSCJAG00000010701 possible_ortholog 8 retrogenes
retro_cjac_1063, retro_cjac_1452, retro_cjac_1875, retro_cjac_2202, retro_cjac_2453, retro_cjac_2696, retro_cjac_2975, retro_cjac_3232,
Dipodomys ordii ENSDORG00000014522 possible_ortholog 2 retrogenes
retro_dord_228, retro_dord_699,
Equus caballus ENSECAG00000015242 ortholog_one2one 1 retrogene
retro_ecab_785,
Homo sapiens ENSG00000196531 ortholog_one2one 6 retrogenes
retro_hsap_3006, retro_hsap_3027, retro_hsap_3968, retro_hsap_3992, retro_hsap_737, retro_hsap_77,
Loxodonta africana ENSLAFG00000004598 possible_ortholog 6 retrogenes
retro_lafr_1107, retro_lafr_113, retro_lafr_1251, retro_lafr_166, retro_lafr_491, retro_lafr_958,
Macropus eugenii ENSMEUG00000008412 possible_ortholog 3 retrogenes
retro_meug_1630, retro_meug_2063, retro_meug_2147,
Microcebus murinus ENSMICG00000016465 possible_ortholog 5 retrogenes
retro_mmur_1122, retro_mmur_450, retro_mmur_585, retro_mmur_684, retro_mmur_807,
Myotis lucifugus ENSMLUG00000001169 possible_ortholog 16 retrogenes
retro_mluc_1147, retro_mluc_1653, retro_mluc_1668, retro_mluc_1756, retro_mluc_1767, retro_mluc_1851, retro_mluc_1881, retro_mluc_1941, retro_mluc_2587, retro_mluc_2600, retro_mluc_414, retro_mluc_492, retro_mluc_526, retro_mluc_641, retro_mluc_725, retro_mluc_861,
Mus musculus ENSMUSG00000061315 possible_ortholog 1 retrogene
retro_mmus_968,
Ochotona princeps ENSOPRG00000001781 possible_ortholog 3 retrogenes
retro_opri_264, retro_opri_758, retro_opri_961,
Procavia capensis ENSPCAG00000007067 possible_ortholog 5 retrogenes
retro_pcap_150, retro_pcap_224, retro_pcap_282, retro_pcap_305, retro_pcap_324,
Sarcophilus harrisii ENSSHAG00000002175 ortholog_one2one 1 retrogene
retro_shar_213,
Tursiops truncatus ENSTTRG00000002150 ortholog_one2one 2 retrogenes
retro_ttru_1157, retro_ttru_760,
Vicugna pacos ENSVPAG00000004028 possible_ortholog 2 retrogenes
retro_vpac_485, retro_vpac_611,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_889 85.45 84.38
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2. retro_mmul_1233 92.78 100.00
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3. retro_mmul_1933 75.00 54.69
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4. retro_mmul_2066 54.41 69.79
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Download FASTA sequences of all ENSMMUG00000003073 retrocopies