Parental gene:

RPLP0, ENSMEUG00000016409

Aliases:None
Description:ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371]
Organism:Wallaby (Macropus eugenii)
Coordinates:GeneScaffold_1311:69036..72375(-)


>ENSMEUG00000016409
ATGCCCAGGGAAGACAGGGCTACCTGGAAGTCCAATTACTTCCTGAAGATCATCCAACTTTTGGATGATTATCCAAAATG
CTTCATTGTGGGAGCAGACAATGTGGGCTCCAAGCAGATGCAGCAGATTCGGATGTCCCTCCGTGGAAAGGCCGTCGTAT
TGATGGGAAAGAACACCATGATGCGCAAAGCCATTCGTGGTCATCTGGAGAACAACCCTGCCTTGGAGAAGCTGCTGCCT
CATATTCGGGGGAATGTGGGCTTTGTGTTCACCAAGGAGGATCTGACTGAGATTAGGGATATGCTTCTGGCCAATAAGGT
GCCAGCTGCTGCCCGTGCTGGTGCCATTGCCCCATGTGATGTCACTGTGCCCGCCCAGAACACTGGTCTGGGTCCCGAGA
AGACTTCCTTCTTCCAGGCTCTGGGTATCACCACCAAGATTTCCAGGGGCACCATTGAAATCTTGAGTGATGTGCAGCTC
ATTAAGACTGGAGACAAAGTGGGTGCCAGTGAGGCCACTTTGTTGAATATGCTGAACATTTCCCCGTTCTCCTTTGGGCT
GATCATTCAGCAAGTGTTTGACAATGGCAGCATCTACAACCCTGAAGTGCTGGACATCACGGAGGAGACTTTGCACCTTC
GGTTCTTAGAGGGTGTCCGTAATGTTGCCAGCGTCTGTCTGCAGATTGGCTACCCAACTGTTGCATCAGTACCCCACTCA
ATCATCAATGGGTACAAGCGAGTCTTGGCTGTAGCTGTGGAGACGGAATACACTTTCCCACTTGCTGAAAAGGTGAAGGC
CTTCCTGGCCGACCCCTCCGCATTTGCAGTGGCCGCCCCTGTGGCAGCTGCTCCAGCTGCTGCTGCACCGGCTGCTGCCG
CTCCAGCCAAGGTGGAAGCCAAGGAAGAGTCGGAAGAGTCTGATGAAGATATGGGATTTGGTCTGTTTGATTAG

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000003756 ortholog_one2one 2 retrogenes
retro_acar_111, retro_acar_115,
Ailuropoda melanoleuca ENSAMEG00000005144 possible_ortholog 4 retrogenes
retro_amel_1179, retro_amel_1194, retro_amel_1377, retro_amel_847,
Canis familiaris ENSCAFG00000010227 possible_ortholog 5 retrogenes
retro_cfam_1580, retro_cfam_224, retro_cfam_487, retro_cfam_534, retro_cfam_693,
Callithrix jacchus ENSCJAG00000008677 possible_ortholog 3 retrogenes
retro_cjac_1693, retro_cjac_2840, retro_cjac_786,
Cavia porcellus ENSCPOG00000021812 possible_ortholog 5 retrogenes
retro_cpor_298, retro_cpor_449, retro_cpor_475, retro_cpor_498, retro_cpor_601,
Equus caballus ENSECAG00000015816 possible_ortholog 2 retrogenes
retro_ecab_1090, retro_ecab_585,
Felis catus ENSFCAG00000013354 possible_ortholog 1 retrogene
retro_fcat_441,
Gorilla gorilla ENSGGOG00000026582 possible_ortholog 5 retrogenes
retro_ggor_1088, retro_ggor_1771, retro_ggor_472, retro_ggor_649, retro_ggor_650,
Myotis lucifugus ENSMLUG00000001970 possible_ortholog 11 retrogenes
retro_mluc_1016, retro_mluc_1460, retro_mluc_1503, retro_mluc_1806, retro_mluc_1966, retro_mluc_2293, retro_mluc_268, retro_mluc_497, retro_mluc_564, retro_mluc_565, retro_mluc_882,
Macaca mulatta ENSMMUG00000009157 possible_ortholog 2 retrogenes
retro_mmul_2245, retro_mmul_939,
Mus musculus ENSMUSG00000067274 possible_ortholog 2 retrogenes
retro_mmus_143, retro_mmus_2249,
Oryctolagus cuniculus ENSOCUG00000005749 possible_ortholog 2 retrogenes
retro_ocun_293, retro_ocun_376,
Otolemur garnettii ENSOGAG00000003843 possible_ortholog 4 retrogenes
retro_ogar_2184, retro_ogar_2294, retro_ogar_556, retro_ogar_713,
Petromyzon marinus ENSPMAG00000001339 ortholog_one2many 1 retrogene
retro_pmar_6,
Pongo abelii ENSPPYG00000005022 possible_ortholog 5 retrogenes
retro_pabe_2113, retro_pabe_3035, retro_pabe_568, retro_pabe_66, retro_pabe_749,
Rattus norvegicus ENSRNOG00000001148 possible_ortholog 3 retrogenes
retro_rnor_1350, retro_rnor_2092, retro_rnor_2970,
Sarcophilus harrisii ENSSHAG00000001623 ortholog_one2one 2 retrogenes
retro_shar_286, retro_shar_413,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_meug_294 80.38 99.68
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2. retro_meug_772 73.20 60.57
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3. retro_meug_1211 83.96 100.00
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4. retro_meug_1245 96.53 100.00
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5. retro_meug_1339 84.42 86.44
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6. retro_meug_1410 81.38 59.31
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7. retro_meug_1672 79.69 100.00
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8. retro_meug_1689 90.91 89.91
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9. retro_meug_1789 68.75 50.16
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10. retro_meug_1800 91.51 100.00
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11. retro_meug_1943 87.73 51.10
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12. retro_meug_2166 70.62 100.00
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Download FASTA sequences of all ENSMEUG00000016409 retrocopies