Parental gene:

vbp1 (1 of 2), ENSLACG00000016144

Aliases:None
Description:von Hippel-Lindau binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050522-494]
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH126790.1:1465483..1482421(-)


>ENSLACG00000016144
CTTTCCAAGATGGCGGCGACCAGTGAGAACAGCAATGCTGCAGGAGCCAAGAAGAGCCATTTAGGCATTCCAGAGGCTGT
GTTTGTGGAGGATGTAGACACATTTATGAAGCAGCCAGGGAATGAGACTGCTGACATTGTGCTCAAAAAGTTGGATGAAC
AGTATCAGAAGTATAAATTCATGGAACTTAATCTTGTTCAAAAGAAAAAAAGGCTAAAAAGTCAGATCCCAGAAATAAAA
CAGACGCTAGAGATTTTAAAACACATGCAGAAAAAAAAGGGAACTACAGACCCAATGGAGACCAGGTTTTTATTGGCAGA
TAATCTGTATTGTAAAGCCTCAGTTCTTCCTACAGATAAAGTCTGCTTGTGGTTGGGGGTAAGTCCTACTATGAGAACAT
TTGAGTTTGAATCTTCACTGAAGAAATACCATGACAATATCTCTGCTGTCCCACTGAACAAAGAAGGCAAAAAAAGAAGT
TTAGGTTTTCTTGTCGAGGGGTTCCCTAGAAAACAAGCATATATGGCCAGAGTTTATAACTGGGATGTAAAAAGAAGAAA
TAAGGATGATCCCACTAAAGCCAGC

Library Parental gene expression (RPM)
DRP000627_gill 0 .99 RPM
DRP000627_kidney 0 .72 RPM
DRP000627_pectoral_fin 1 .07 RPM
DRP000627_pelvic_fin 2 .21 RPM
DRP000627_pharynx 1 .25 RPM
DRP000627_tail_muscle 1 .56 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009058 ortholog_one2many 2 retrogenes
retro_amel_1232, retro_amel_1346,
Canis familiaris ENSCAFG00000019639 ortholog_one2many 2 retrogenes
retro_cfam_1030, retro_cfam_573,
Cavia porcellus ENSCPOG00000013652 ortholog_many2many 1 retrogene
retro_cpor_466,
Dasypus novemcinctus ENSDNOG00000019432 ortholog_one2many 1 retrogene
retro_dnov_694,
Dipodomys ordii ENSDORG00000004628 ortholog_one2many 2 retrogenes
retro_dord_213, retro_dord_587,
Echinops telfairi ENSETEG00000017655 ortholog_one2many 2 retrogenes
retro_etel_2085, retro_etel_552,
Loxodonta africana ENSLAFG00000016507 ortholog_one2many 2 retrogenes
retro_lafr_1200, retro_lafr_163,
Myotis lucifugus ENSMLUG00000015396 ortholog_one2many 3 retrogenes
retro_mluc_1600, retro_mluc_2019, retro_mluc_986,
Macaca mulatta ENSMMUG00000015095 ortholog_many2many 1 retrogene
retro_mmul_124,
Mus musculus ENSMUSG00000031197 ortholog_one2many 1 retrogene
retro_mmus_2220,
Nomascus leucogenys ENSNLEG00000014475 ortholog_one2many 1 retrogene
retro_nleu_537,
Oryctolagus cuniculus ENSOCUG00000017448 ortholog_many2many 2 retrogenes
retro_ocun_233, retro_ocun_747,
Otolemur garnettii ENSOGAG00000016566 ortholog_one2many 1 retrogene
retro_ogar_3121,
Sarcophilus harrisii ENSSHAG00000002823 ortholog_many2many 1 retrogene
retro_shar_7,
Sus scrofa ENSSSCG00000012811 ortholog_one2many 1 retrogene
retro_sscr_131,
Ictidomys tridecemlineatus ENSSTOG00000006684 ortholog_one2many 1 retrogene
retro_itri_1492,
Tupaia belangeri ENSTBEG00000007833 ortholog_one2many 5 retrogenes
retro_tbel_3084, retro_tbel_3369, retro_tbel_3652, retro_tbel_553, retro_tbel_632,
Tarsius syrichta ENSTSYG00000002205 ortholog_one2many 1 retrogene
retro_tsyr_2032,
Tursiops truncatus ENSTTRG00000016258 ortholog_one2many 1 retrogene
retro_ttru_988,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_18 79.49 100.00
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Download FASTA sequences of all ENSLACG00000016144 retrocopies