Parental gene:

TPM3, ENSG00000143549

Aliases:TPM3, CAPM1, CFTD, HEL-189, HEL-S-82p, NEM1, OK/SW-cl.5, TM-5, TM3, TM30, TM30nm, TM5, TPMsk3, TRK, hscp30
Description:tropomyosin 3 [Source:HGNC Symbol;Acc:12012]
Organism:Human (Homo sapiens)
Coordinates:1:154127783..154167124(-)


>ENSG00000143549
ATGATGGAGGCCATCAAGAAAAAGATGCAGATGCTGAAGTTAGACAAGGAGAATGCTCTGGATCGGGCAGAGCAAGCTGA
AGCTGAGCAGAAGCAGGCAGAAGAAAGAAGTAAACAGCTGGAGGATGAGCTGGCAGCCATGCAGAAGAAGCTGAAAGGGA
CAGAGGATGAGCTGGACAAGTATTCTGAAGCTTTGAAGGATGCCCAGGAGAAGCTGGAACTGGCAGAGAAGAAGGCTGCT
GATGCTGAGGCTGAGGTGGCCTCCTTGAACCGTAGGATCCAGCTGGTTGAAGAAGAGCTGGACCGTGCTCAGGAGCGCCT
GGCCACTGCCCTGCAAAAGCTGGAAGAAGCTGAAAAAGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTTATTGAAAACC
GGGCCTTAAAAGATGAAGAAAAGATGGAACTCCAGGAAATCCAACTCAAAGAAGCTAAGCACATTGCAGAAGAGGCAGAT
AGGAAGTATGAAGAGGTGGCTCGTAAGTTGGTGATCATTGAAGGAGACTTGGAACGCACAGAGGAACGAGCTGAGCTGGC
AGAGTCTAAGTGTTCTGAGCTGGAGGAGGAGCTGAAGAATGTCACCAACAACCTCAAGTCTCTTGAGGCTCAGGCGGAGA
AGTACTCTCAAAAAGAAGATAAATATGAGGAAGAAATCAAGATTCTTACTGATAAACTCAAGGAGGCAGAGACCCGTGCT
GAGTTTGCTGAGAGATCGGTAGCCAAGCTGGAAAAGACAATTGATGACCTGGAAGATGAGCTCTATGCCCAGAAACTGAA
GTACAAGGCCATTAGCGAGGAGCTGGACCACGCCCTCAATGACATGACCTCTATATAA

Library Parental gene expression (RPM)
bodymap2_adipose 404 .93 RPM
bodymap2_adrenal 369 .51 RPM
bodymap2_brain 214 .17 RPM
bodymap2_breast 275 .26 RPM
bodymap2_colon 177 .60 RPM
bodymap2_heart 174 .40 RPM
bodymap2_kidney 210 .94 RPM
bodymap2_liver 92 .56 RPM
bodymap2_lung 466 .61 RPM
bodymap2_lymph_node 264 .49 RPM
bodymap2_ovary 156 .91 RPM
bodymap2_prostate 137 .16 RPM
bodymap2_skeletal_muscle 495 .87 RPM
bodymap2_testis 238 .91 RPM
bodymap2_thyroid 446 .09 RPM
bodymap2_white_blood_cells 781 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011877 ortholog_one2one 2 retrogenes
retro_amel_1017, retro_amel_1212,
Bos taurus ENSBTAG00000033217 ortholog_one2one 3 retrogenes
retro_btau_1166, retro_btau_210, retro_btau_933,
Canis familiaris ENSCAFG00000017311 ortholog_one2one 4 retrogenes
retro_cfam_1278, retro_cfam_1678, retro_cfam_2089, retro_cfam_983,
Cavia porcellus ENSCPOG00000007279 ortholog_one2one 1 retrogene
retro_cpor_150,
Dasypus novemcinctus ENSDNOG00000019156 ortholog_one2one 7 retrogenes
retro_dnov_1322, retro_dnov_1767, retro_dnov_329, retro_dnov_451, retro_dnov_848, retro_dnov_878, retro_dnov_944,
Equus caballus ENSECAG00000010942 ortholog_one2one 1 retrogene
retro_ecab_390,
Felis catus ENSFCAG00000012596 ortholog_one2one 1 retrogene
retro_fcat_1441,
Homo sapiens ENSG00000167460 within_species_paralog 2 retrogenes
retro_hsap_2623, retro_hsap_3969,
Myotis lucifugus ENSMLUG00000013331 ortholog_one2one 1 retrogene
retro_mluc_1038,
Macaca mulatta ENSMMUG00000010805 ortholog_one2one 10 retrogenes
retro_mmul_1019, retro_mmul_1240, retro_mmul_1384, retro_mmul_1385, retro_mmul_1703, retro_mmul_1829, retro_mmul_2128, retro_mmul_2354, retro_mmul_314, retro_mmul_880,
Mustela putorius furo ENSMPUG00000007875 ortholog_one2one 1 retrogene
retro_mputfur_604,
Mus musculus ENSMUSG00000027940 ortholog_one2one 1 retrogene
retro_mmus_21,
Oryctolagus cuniculus ENSOCUG00000011821 ortholog_one2one 2 retrogenes
retro_ocun_699, retro_ocun_8,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1482 91.00 79.84
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2. retro_hsap_1639 95.95 99.60
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3. retro_hsap_2001 95.98 100.00
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4. retro_hsap_2011 87.20 100.00
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5. retro_hsap_2012 86.00 100.00
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6. retro_hsap_2237 85.03 58.47
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7. retro_hsap_2395 92.34 100.00
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8. retro_hsap_3711 90.97 62.07
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9. retro_hsap_3893 85.89 100.00
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Download FASTA sequences of all ENSG00000143549 retrocopies