Parental gene:

HNRNPA1, ENSG00000135486

Aliases:HNRNPA1, ALS19, ALS20, HNRPA1, HNRPA1L3, IBMPFD3, hnRNP A1, hnRNP-A1
Description:heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:5031]
Organism:Human (Homo sapiens)
Coordinates:12:54673976..54680872(+)


>ENSG00000135486
ATGTCTAAGTCAGAGTCTCCTAAAGAGCCCGAACAGCTGAGGAAGCTCTTCATTGGAGGGTTGAGCTTTGAAACAACTGA
TGAGAGCCTGAGGAGCCATTTTGAGCAATGGGGAACGCTCACGGACTGTGTGGTAATGAGAGATCCAAACACCAAGCGCT
CCAGGGGCTTTGGGTTTGTCACATATGCCACTGTGGAGGAGGTGGATGCAGCTATGAATGCAAGGCCACACAAGGTGGAT
GGAAGAGTTGTGGAACCAAAGAGAGCTGTCTCCAGAGAAGATTCTCAAAGACCAGGTGCCCACTTAACTGTGAAAAAGAT
ATTTGTTGGTGGCATTAAAGAAGACACTGAAGAACATCACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTGA
TTGAAATCATGACTGACCGAGGCAGTGGCAAGAAAAGGGGCTTTGCCTTTGTAACCTTTGACGACCATGACTCCGTGGAT
AAGATTGTCATTCAGAAATACCATACTGTGAATGGCCACAACTGTGAAGTTAGAAAAGCCCTGTCAAAGCAAGAGATGGC
TAGTGCTTCATCCAGCCAAAGAGGTCGAAGTGGTTCTGGAAACTTTGGTGGTGGTCGTGGAGGTGGTTTCGGTGGGAATG
ACAACTTCGGTCGTGGAGGAAACTTCAGTGGTCGTGGTGGCTTTGGTGGCAGCCGTGGTGGTGGTGGATATGGTGGCAGT
GGGGATGGCTATAATGGATTTGGTAATGATGGTGGTTATGGAGGAGGCGGCCCTGGTTACTCTGGAGGAAGCAGAGGCTA
TGGAAGTGGTGGACAGGGTTATGGAAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATGACAGCTATAACAACGGAG
GCGGAGGCGGCTTTGGCGGTGGTAGTGGAAGCAATTTTGGAGGTGGTGGAAGCTACAATGATTTTGGGAATTACAACAAT
CAGTCTTCAAATTTTGGACCCATGAAGGGAGGAAATTTTGGAGGCAGAAGCTCTGGCCCCTATGGCGGTGGAGGCCAATA
CTTTGCAAAACCACGAAACCAAGGTGGCTATGGCGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGAAGATTTTAA

Library Parental gene expression (RPM)
bodymap2_adipose 775 .80 RPM
bodymap2_adrenal 1006 .81 RPM
bodymap2_brain 373 .10 RPM
bodymap2_breast 438 .74 RPM
bodymap2_colon 730 .72 RPM
bodymap2_heart 200 .75 RPM
bodymap2_kidney 336 .99 RPM
bodymap2_liver 126 .11 RPM
bodymap2_lung 423 .66 RPM
bodymap2_lymph_node 358 .27 RPM
bodymap2_ovary 1611 .66 RPM
bodymap2_prostate 619 .57 RPM
bodymap2_skeletal_muscle 321 .98 RPM
bodymap2_testis 521 .76 RPM
bodymap2_thyroid 609 .76 RPM
bodymap2_white_blood_cells 596 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000001553 ortholog_one2one 20 retrogenes
retro_btau_1019, retro_btau_1065, retro_btau_1268, retro_btau_1378, retro_btau_1379, retro_btau_1437, retro_btau_1455, retro_btau_1657, retro_btau_1673, retro_btau_283, retro_btau_337, retro_btau_403, retro_btau_462, retro_btau_516, retro_btau_519, retro_btau_589, retro_btau_602, retro_btau_677, retro_btau_715, retro_btau_822,
Cavia porcellus ENSCPOG00000020972 possible_ortholog 1 retrogene
retro_cpor_1078,
Equus caballus ENSECAG00000008676 ortholog_one2one 1 retrogene
retro_ecab_74,
Felis catus ENSFCAG00000010150 ortholog_one2one 9 retrogenes
retro_fcat_1574, retro_fcat_1742, retro_fcat_1867, retro_fcat_382, retro_fcat_474, retro_fcat_712, retro_fcat_781, retro_fcat_844, retro_fcat_888,
Homo sapiens ENSG00000138668 other_paralog 1 retrogene
retro_hsap_4689,
Homo sapiens ENSG00000170144 within_species_paralog 11 retrogenes
retro_hsap_1117, retro_hsap_1274, retro_hsap_1572, retro_hsap_209, retro_hsap_2194, retro_hsap_2664, retro_hsap_2951, retro_hsap_34, retro_hsap_4764, retro_hsap_665, retro_hsap_862,
Homo sapiens ENSG00000197451 other_paralog 1 retrogene
retro_hsap_962,
Gorilla gorilla ENSGGOG00000003040 ortholog_one2one 6 retrogenes
retro_ggor_1006, retro_ggor_1010, retro_ggor_1221, retro_ggor_1738, retro_ggor_2041, retro_ggor_950,
Mustela putorius furo ENSMPUG00000004620 possible_ortholog 1 retrogene
retro_mputfur_34,
Mustela putorius furo ENSMPUG00000005735 possible_ortholog 2 retrogenes
retro_mputfur_1378, retro_mputfur_653,
Mus musculus ENSMUSG00000046434 ortholog_one2one 3 retrogenes
retro_mmus_1861, retro_mmus_410, retro_mmus_543,
Nomascus leucogenys ENSNLEG00000017659 ortholog_one2one 34 retrogenes
retro_nleu_1011, retro_nleu_1090, retro_nleu_1257, retro_nleu_130, retro_nleu_132, retro_nleu_1497, retro_nleu_1630, retro_nleu_1648, retro_nleu_166, retro_nleu_167, retro_nleu_1695, retro_nleu_1739, retro_nleu_1774, retro_nleu_1802, retro_nleu_1875, retro_nleu_190, retro_nleu_2040, retro_nleu_2222, retro_nleu_2304, retro_nleu_2324, retro_nleu_2378, retro_nleu_2690, retro_nleu_2742, retro_nleu_2852, retro_nleu_32, retro_nleu_366, retro_nleu_458, retro_nleu_587, retro_nleu_601, retro_nleu_645, retro_nleu_648, retro_nleu_708, retro_nleu_825, retro_nleu_987,
Oryctolagus cuniculus ENSOCUG00000013350 possible_ortholog 1 retrogene
retro_ocun_1675,
Oreochromis niloticus ENSONIG00000012248 ortholog_one2many 1 retrogene
retro_onil_38,
Ochotona princeps ENSOPRG00000006107 ortholog_one2one 10 retrogenes
retro_opri_1183, retro_opri_338, retro_opri_349, retro_opri_424, retro_opri_456, retro_opri_597, retro_opri_753, retro_opri_782, retro_opri_79, retro_opri_843,
Pteropus vampyrus ENSPVAG00000000322 ortholog_one2one 9 retrogenes
retro_pvam_1133, retro_pvam_1230, retro_pvam_1313, retro_pvam_1370, retro_pvam_196, retro_pvam_300, retro_pvam_453, retro_pvam_643, retro_pvam_859,
Rattus norvegicus ENSRNOG00000036839 ortholog_one2one 17 retrogenes
retro_rnor_1001, retro_rnor_1322, retro_rnor_1658, retro_rnor_1770, retro_rnor_1786, retro_rnor_1846, retro_rnor_1987, retro_rnor_2194, retro_rnor_2482, retro_rnor_2551, retro_rnor_2619, retro_rnor_2657, retro_rnor_2881, retro_rnor_2944, retro_rnor_2945, retro_rnor_2965, retro_rnor_2969,
Tupaia belangeri ENSTBEG00000008238 ortholog_one2one 30 retrogenes
retro_tbel_1219, retro_tbel_156, retro_tbel_162, retro_tbel_1643, retro_tbel_1830, retro_tbel_1967, retro_tbel_2192, retro_tbel_2195, retro_tbel_2211, retro_tbel_2330, retro_tbel_261, retro_tbel_2666, retro_tbel_2673, retro_tbel_2703, retro_tbel_276, retro_tbel_2774, retro_tbel_2787, retro_tbel_2970, retro_tbel_3473, retro_tbel_3976, retro_tbel_3995, retro_tbel_4266, retro_tbel_4271, retro_tbel_453, retro_tbel_4653, retro_tbel_4729, retro_tbel_692, retro_tbel_70, retro_tbel_79, retro_tbel_839,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_84 96.88 100.00
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2. retro_hsap_158 87.19 100.00
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3. retro_hsap_291 86.82 100.00
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4. retro_hsap_332 87.37 91.56
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5. retro_hsap_394 87.83 61.56
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6. retro_hsap_414 83.39 99.02
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7. retro_hsap_437 85.61 87.95
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8. retro_hsap_482 87.50 62.37
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9. retro_hsap_668 82.89 97.38
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10. retro_hsap_845 87.78 68.75
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11. retro_hsap_924 86.56 100.00
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12. retro_hsap_1021 75.18 75.81
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13. retro_hsap_1042 83.01 64.38
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14. retro_hsap_1082 84.31 63.12
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15. retro_hsap_1240 79.56 55.94
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16. retro_hsap_1276 71.28 57.81
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17. retro_hsap_1282 59.26 91.25
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18. retro_hsap_1287 70.73 63.44
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19. retro_hsap_1481 86.96 61.56
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20. retro_hsap_1584 72.82 64.38
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21. retro_hsap_1613 82.04 99.69
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22. retro_hsap_1638 92.81 100.00
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23. retro_hsap_1711 88.12 99.69
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24. retro_hsap_1899 82.97 56.88
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25. retro_hsap_1933 97.81 100.00
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26. retro_hsap_2002 88.89 64.38
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27. retro_hsap_2029 92.83 100.00
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28. retro_hsap_2091 79.83 73.12
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29. retro_hsap_2096 83.47 73.12
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30. retro_hsap_2197 95.00 100.00
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31. retro_hsap_2347 83.12 100.00
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32. retro_hsap_2379 85.87 83.75
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33. retro_hsap_2636 82.55 100.00
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34. retro_hsap_2640 90.13 72.31
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35. retro_hsap_2668 80.21 76.88
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36. retro_hsap_2718 75.14 93.82
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37. retro_hsap_2857 87.18 52.15
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38. retro_hsap_2917 78.26 99.06
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39. retro_hsap_2944 81.59 74.06
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40. retro_hsap_3049 88.47 99.69
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41. retro_hsap_3055 82.56 52.15
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42. retro_hsap_3343 89.10 100.00
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43. retro_hsap_3393 78.89 90.00
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44. retro_hsap_3432 85.57 62.81
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45. retro_hsap_3439 84.06 64.06
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46. retro_hsap_3449 84.83 100.00
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47. retro_hsap_3549 74.36 60.62
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48. retro_hsap_3745 72.73 79.15
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49. retro_hsap_3756 92.24 100.00
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50. retro_hsap_3757 85.00 80.31
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51. retro_hsap_3979 87.23 100.00
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52. retro_hsap_4011 82.35 100.00
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53. retro_hsap_4084 96.41 78.44
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54. retro_hsap_4218 86.61 74.38
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55. retro_hsap_4282 73.29 85.22
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56. retro_hsap_4747 90.62 69.69
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57. retro_hsap_4883 72.63 50.27
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Download FASTA sequences of all ENSG00000135486 retrocopies