Parental gene:

HCP-1, ENSECAG00000008676

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A1 [Source:RefSeq peptide;Acc:NP_001229438]
Organism:Horse (Equus caballus)
Coordinates:6:71108981..71112476(+)


>ENSECAG00000008676
ATGTCTAAGTCAGAGTCTCCCAAAGAGCCCGAACAGCTGCGGAAGCTCTTCATCGGAGGTTTGAGCTTTGAAACAACCGA
TGAGAGTCTCAGGAGCCATTTTGAGCAATGGGGAACGCTCACGGACTGTGTGGTAATGAGAGATCCAAACACCAAGCGCT
CCAGAGGCTTTGGCTTTGTCACGTACGCCACTGTGGAGGAGGTGGATGCAGCTATGAATGCAAGGCCACACAAGGTGGAT
GGACGAGTTGTGGAACCAAAGAGGGCCGTCTCAAGAGAAGATTCTCAAAGACCTGGTGCCCACTTAACTGTGAAAAAGAT
TTTTGTTGGTGGCATTAAAGAAGACACTGAAGAACATCACCTAAGAGATTACTTTGAACAATATGGGAAAATTGAAGTGA
TTGAAATCATGACTGACAGAGGCAGTGGCAAGAAGAGAGGATTTGCTTTTGTAACTTTTGATGACCATGACTCCGTAGAC
AAGATTGTTATTCAGAAATACCATACTGTGAATGGCCACAACTGTGAAGTAAGGAAAGCCCTATCTAAGCAAGAGATGGC
TAGTGCTTCATCCAGCCAAAGAGGTCGAAGTGGTTCTGGAAATTTTGGCGGTGGTCGTGGAGGTGGTTTTGGTGGGAATG
ACAACTTTGGTCGCGGAGGAAACTTCAGTGGTCGAGGTGGCTTTGGTGGCAGCCGTGGTGGTGGTGGATATGGTGGCAGT
GGGGATGGCTATAATGGATTTGGTAATGATGGTGGTTATGGAGGAGGCGGCCCTGGTTACTCTGGAGGAAGCAGAGGCTA
TGGAAGTGGTGGACAGGGTTATGGAAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATGACAGCTATAACAACGGAG
GAGGCGGAGGCGGCTTTGGCGGTGGTAGTGGTAGCAATTTTGGAGGTGGCGGAAGCTACAATGATTTTGGAAATTACAAC
AATCAATCTTCAAATTTTGGACCCATGAAAGGAGGAAATTTTGGAGGCAGAAGCTCTGGCCCCTATGGTGGTGGAGGCCA
ATACTTTGCCAAACCACGAAACCAAGGTGGCTATGGCGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGAAGGTTTT
AA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 43 .80 RPM
SRP021940_cerebellum 29 .60 RPM
SRP021940_embryo 438 .85 RPM
SRP021940_placental_villous 69 .33 RPM
SRP021940_synovial_membrane 74 .61 RPM
SRP021940_testis 34 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000001553 ortholog_one2one 20 retrogenes
retro_btau_1019, retro_btau_1065, retro_btau_1268, retro_btau_1378, retro_btau_1379, retro_btau_1437, retro_btau_1455, retro_btau_1657, retro_btau_1673, retro_btau_283, retro_btau_337, retro_btau_403, retro_btau_462, retro_btau_516, retro_btau_519, retro_btau_589, retro_btau_602, retro_btau_677, retro_btau_715, retro_btau_822,
Cavia porcellus ENSCPOG00000020972 possible_ortholog 1 retrogene
retro_cpor_1078,
Equus caballus ENSECAG00000022692 other_paralog 1 retrogene
retro_ecab_1082,
Felis catus ENSFCAG00000010150 ortholog_one2one 9 retrogenes
retro_fcat_1574, retro_fcat_1742, retro_fcat_1867, retro_fcat_382, retro_fcat_474, retro_fcat_712, retro_fcat_781, retro_fcat_844, retro_fcat_888,
Homo sapiens ENSG00000135486 ortholog_one2one 57 retrogenes
retro_hsap_1021, retro_hsap_1042, retro_hsap_1082, retro_hsap_1240, retro_hsap_1276, retro_hsap_1282, retro_hsap_1287, retro_hsap_1481, retro_hsap_158, retro_hsap_1584, retro_hsap_1613, retro_hsap_1638, retro_hsap_1711, retro_hsap_1899, retro_hsap_1933, retro_hsap_2002, retro_hsap_2029, retro_hsap_2091, retro_hsap_2096, retro_hsap_2197, retro_hsap_2347, retro_hsap_2379, retro_hsap_2636, retro_hsap_2640, retro_hsap_2668, retro_hsap_2718, retro_hsap_2857, retro_hsap_291, retro_hsap_2917, retro_hsap_2944, retro_hsap_3049, retro_hsap_3055, retro_hsap_332, retro_hsap_3343, retro_hsap_3393, retro_hsap_3432, retro_hsap_3439, retro_hsap_3449, retro_hsap_3549, retro_hsap_3745, retro_hsap_3756, retro_hsap_3757, retro_hsap_394, retro_hsap_3979, retro_hsap_4011, retro_hsap_4084, retro_hsap_414, retro_hsap_4218, retro_hsap_4282, retro_hsap_437, retro_hsap_4747, retro_hsap_482, retro_hsap_4883, retro_hsap_668, retro_hsap_84, retro_hsap_845, retro_hsap_924,
Gorilla gorilla ENSGGOG00000003040 ortholog_one2one 6 retrogenes
retro_ggor_1006, retro_ggor_1010, retro_ggor_1221, retro_ggor_1738, retro_ggor_2041, retro_ggor_950,
Mustela putorius furo ENSMPUG00000004620 possible_ortholog 1 retrogene
retro_mputfur_34,
Mustela putorius furo ENSMPUG00000005735 possible_ortholog 2 retrogenes
retro_mputfur_1378, retro_mputfur_653,
Mus musculus ENSMUSG00000046434 ortholog_one2one 3 retrogenes
retro_mmus_1861, retro_mmus_410, retro_mmus_543,
Nomascus leucogenys ENSNLEG00000017659 ortholog_one2one 34 retrogenes
retro_nleu_1011, retro_nleu_1090, retro_nleu_1257, retro_nleu_130, retro_nleu_132, retro_nleu_1497, retro_nleu_1630, retro_nleu_1648, retro_nleu_166, retro_nleu_167, retro_nleu_1695, retro_nleu_1739, retro_nleu_1774, retro_nleu_1802, retro_nleu_1875, retro_nleu_190, retro_nleu_2040, retro_nleu_2222, retro_nleu_2304, retro_nleu_2324, retro_nleu_2378, retro_nleu_2690, retro_nleu_2742, retro_nleu_2852, retro_nleu_32, retro_nleu_366, retro_nleu_458, retro_nleu_587, retro_nleu_601, retro_nleu_645, retro_nleu_648, retro_nleu_708, retro_nleu_825, retro_nleu_987,
Oryctolagus cuniculus ENSOCUG00000013350 possible_ortholog 1 retrogene
retro_ocun_1675,
Oreochromis niloticus ENSONIG00000012248 ortholog_one2many 1 retrogene
retro_onil_38,
Ochotona princeps ENSOPRG00000006107 ortholog_one2one 10 retrogenes
retro_opri_1183, retro_opri_338, retro_opri_349, retro_opri_424, retro_opri_456, retro_opri_597, retro_opri_753, retro_opri_782, retro_opri_79, retro_opri_843,
Pteropus vampyrus ENSPVAG00000000322 ortholog_one2one 9 retrogenes
retro_pvam_1133, retro_pvam_1230, retro_pvam_1313, retro_pvam_1370, retro_pvam_196, retro_pvam_300, retro_pvam_453, retro_pvam_643, retro_pvam_859,
Rattus norvegicus ENSRNOG00000036839 ortholog_one2one 17 retrogenes
retro_rnor_1001, retro_rnor_1322, retro_rnor_1658, retro_rnor_1770, retro_rnor_1786, retro_rnor_1846, retro_rnor_1987, retro_rnor_2194, retro_rnor_2482, retro_rnor_2551, retro_rnor_2619, retro_rnor_2657, retro_rnor_2881, retro_rnor_2944, retro_rnor_2945, retro_rnor_2965, retro_rnor_2969,
Tupaia belangeri ENSTBEG00000008238 ortholog_one2one 30 retrogenes
retro_tbel_1219, retro_tbel_156, retro_tbel_162, retro_tbel_1643, retro_tbel_1830, retro_tbel_1967, retro_tbel_2192, retro_tbel_2195, retro_tbel_2211, retro_tbel_2330, retro_tbel_261, retro_tbel_2666, retro_tbel_2673, retro_tbel_2703, retro_tbel_276, retro_tbel_2774, retro_tbel_2787, retro_tbel_2970, retro_tbel_3473, retro_tbel_3976, retro_tbel_3995, retro_tbel_4266, retro_tbel_4271, retro_tbel_453, retro_tbel_4653, retro_tbel_4729, retro_tbel_692, retro_tbel_70, retro_tbel_79, retro_tbel_839,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_74 76.80 85.25
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Download FASTA sequences of all ENSECAG00000008676 retrocopies