Parental gene:

HDAC1, ENSG00000116478

Aliases:HDAC1, GON-10, HD1, RPD3, RPD3L1
Description:histone deacetylase 1 [Source:HGNC Symbol;Acc:4852]
Organism:Human (Homo sapiens)
Coordinates:1:32757686..32799236(+)


>ENSG00000116478
ATGGCGCAGACGCAGGGCACCCGGAGGAAAGTCTGTTACTACTACGACGGGGATGTTGGAAATTACTATTATGGACAAGG
CCACCCAATGAAGCCTCACCGAATCCGCATGACTCATAATTTGCTGCTCAACTATGGTCTCTACCGAAAAATGGAAATCT
ATCGCCCTCACAAAGCCAATGCTGAGGAGATGACCAAGTACCACAGCGATGACTACATTAAATTCTTGCGCTCCATCCGT
CCAGATAACATGTCGGAGTACAGCAAGCAGATGCAGAGATTCAACGTTGGTGAGGACTGTCCAGTATTCGATGGCCTGTT
TGAGTTCTGTCAGTTGTCTACTGGTGGTTCTGTGGCAAGTGCTGTGAAACTTAATAAGCAGCAGACGGACATCGCTGTGA
ATTGGGCTGGGGGCCTGCACCATGCAAAGAAGTCCGAGGCATCTGGCTTCTGTTACGTCAATGATATCGTCTTGGCCATC
CTGGAACTGCTAAAGTATCACCAGAGGGTGCTGTACATTGACATTGATATTCACCATGGTGACGGCGTGGAAGAGGCCTT
CTACACCACGGACCGGGTCATGACTGTGTCCTTTCATAAGTATGGAGAGTACTTCCCAGGAACTGGGGACCTACGGGATA
TCGGGGCTGGCAAAGGCAAGTATTATGCTGTTAACTACCCGCTCCGAGACGGGATTGATGACGAGTCCTATGAGGCCATT
TTCAAGCCGGTCATGTCCAAAGTAATGGAGATGTTCCAGCCTAGTGCGGTGGTCTTACAGTGTGGCTCAGACTCCCTATC
TGGGGATCGGTTAGGTTGCTTCAATCTAACTATCAAAGGACACGCCAAGTGTGTGGAATTTGTCAAGAGCTTTAACCTGC
CTATGCTGATGCTGGGAGGCGGTGGTTACACCATTCGTAACGTTGCCCGGTGCTGGACATATGAGACAGCTGTGGCCCTG
GATACGGAGATCCCTAATGAGCTTCCATACAATGACTACTTTGAATACTTTGGACCAGATTTCAAGCTCCACATCAGTCC
TTCCAATATGACTAACCAGAACACGAATGAGTACCTGGAGAAGATCAAACAGCGACTGTTTGAGAACCTTAGAATGCTGC
CGCACGCACCTGGGGTCCAAATGCAGGCGATTCCTGAGGACGCCATCCCTGAGGAGAGTGGCGATGAGGACGAAGACGAC
CCTGACAAGCGCATCTCGATCTGCTCCTCTGACAAACGAATTGCCTGTGAGGAAGAGTTCTCCGATTCTGAAGAGGAGGG
AGAGGGGGGCCGCAAGAACTCTTCCAACTTCAAAAAAGCCAAGAGAGTCAAAACAGAGGATGAAAAAGAGAAAGACCCAG
AGGAGAAGAAAGAAGTCACCGAAGAGGAGAAAACCAAGGAGGAGAAGCCAGAAGCCAAAGGGGTCAAGGAGGAGGTCAAG
TTGGCCTGA

Library Parental gene expression (RPM)
bodymap2_adipose 46 .22 RPM
bodymap2_adrenal 114 .14 RPM
bodymap2_brain 20 .02 RPM
bodymap2_breast 35 .93 RPM
bodymap2_colon 81 .27 RPM
bodymap2_heart 26 .68 RPM
bodymap2_kidney 82 .20 RPM
bodymap2_liver 38 .28 RPM
bodymap2_lung 68 .02 RPM
bodymap2_lymph_node 147 .10 RPM
bodymap2_ovary 126 .15 RPM
bodymap2_prostate 115 .82 RPM
bodymap2_skeletal_muscle 11 .17 RPM
bodymap2_testis 88 .78 RPM
bodymap2_thyroid 102 .80 RPM
bodymap2_white_blood_cells 150 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Ciona intestinalis ENSCING00000002649 ortholog_one2many 1 retrogene
retro_cint_18,
Callithrix jacchus ENSCJAG00000000970 ortholog_one2one 2 retrogenes
retro_cjac_2490, retro_cjac_830,
Gorilla gorilla ENSGGOG00000011741 ortholog_one2one 1 retrogene
retro_ggor_676,
Myotis lucifugus ENSMLUG00000013837 ortholog_one2many 1 retrogene
retro_mluc_283,
Macaca mulatta ENSMMUG00000009948 ortholog_one2one 2 retrogenes
retro_mmul_1085, retro_mmul_2518,
Mus musculus ENSMUSG00000028800 possible_ortholog 1 retrogene
retro_mmus_153,
Nomascus leucogenys ENSNLEG00000002473 ortholog_one2one 1 retrogene
retro_nleu_259,
Pelodiscus sinensis ENSPSIG00000004134 ortholog_one2one 1 retrogene
retro_psin_44,
Pteropus vampyrus ENSPVAG00000013325 ortholog_one2one 1 retrogene
retro_pvam_1339,
Rattus norvegicus ENSRNOG00000009568 possible_ortholog 3 retrogenes
retro_rnor_1091, retro_rnor_1098, retro_rnor_2457,
Sarcophilus harrisii ENSSHAG00000008787 possible_ortholog 1 retrogene
retro_shar_573,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_826 77.81 64.52
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Download FASTA sequences of all ENSG00000116478 retrocopies