Parental gene:

RPLP0, ENSG00000089157

Aliases:RPLP0, L10E, LP0, P0, PRLP0, RPP0
Description:ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371]
Organism:Human (Homo sapiens)
Coordinates:12:120634488..120639038(-)


>ENSG00000089157
ATGCCCAGGGAAGACAGGGCGACCTGGAAGTCCAACTACTTCCTTAAGATCATCCAACTATTGGATGATTATCCGAAATG
TTTCATTGTGGGAGCAGACAATGTGGGCTCCAAGCAGATGCAGCAGATCCGCATGTCCCTTCGCGGGAAGGCTGTGGTGC
TGATGGGCAAGAACACCATGATGCGCAAGGCCATCCGAGGGCACCTGGAAAACAACCCAGCTCTGGAGAAACTGCTGCCT
CATATCCGGGGGAATGTGGGCTTTGTGTTCACCAAGGAGGACCTCACTGAGATCAGGGACATGTTGCTGGCCAATAAGGT
GCCAGCTGCTGCCCGTGCTGGTGCCATTGCCCCATGTGAAGTCACTGTGCCAGCCCAGAACACTGGTCTCGGGCCCGAGA
AGACCTCCTTTTTCCAGGCTTTAGGTATCACCACTAAAATCTCCAGGGGCACCATTGAAATCCTGAGTGATGTGCAGCTG
ATCAAGACTGGAGACAAAGTGGGAGCCAGCGAAGCCACGCTGCTGAACATGCTCAACATCTCCCCCTTCTCCTTTGGGCT
GGTCATCCAGCAGGTGTTCGACAATGGCAGCATCTACAACCCTGAAGTGCTTGATATCACAGAGGAAACTCTGCATTCTC
GCTTCCTGGAGGGTGTCCGCAATGTTGCCAGTGTCTGTCTGCAGATTGGCTACCCAACTGTTGCATCAGTACCCCATTCT
ATCATCAACGGGTACAAACGAGTCCTGGCCTTGTCTGTGGAGACGGATTACACCTTCCCACTTGCTGAAAAGGTCAAGGC
CTTCTTGGCTGATCCATCTGCCTTTGTGGCTGCTGCCCCTGTGGCTGCTGCCACCACAGCTGCTCCTGCTGCTGCTGCAG
CCCCAGCTAAGGTTGAAGCCAAGGAAGAGTCGGAGGAGTCGGACGAGGATATGGGATTTGGTCTCTTTGACTAA

Library Parental gene expression (RPM)
bodymap2_adipose 635 .70 RPM
bodymap2_adrenal 730 .78 RPM
bodymap2_brain 82 .65 RPM
bodymap2_breast 427 .83 RPM
bodymap2_colon 773 .41 RPM
bodymap2_heart 202 .81 RPM
bodymap2_kidney 471 .29 RPM
bodymap2_liver 442 .56 RPM
bodymap2_lung 667 .16 RPM
bodymap2_lymph_node 1096 .55 RPM
bodymap2_ovary 707 .90 RPM
bodymap2_prostate 1087 .79 RPM
bodymap2_skeletal_muscle 558 .44 RPM
bodymap2_testis 383 .53 RPM
bodymap2_thyroid 482 .21 RPM
bodymap2_white_blood_cells 841 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005144 possible_ortholog 4 retrogenes
retro_amel_1179, retro_amel_1194, retro_amel_1377, retro_amel_847,
Canis familiaris ENSCAFG00000010227 possible_ortholog 5 retrogenes
retro_cfam_1580, retro_cfam_224, retro_cfam_487, retro_cfam_534, retro_cfam_693,
Choloepus hoffmanni ENSCHOG00000002745 ortholog_one2one 2 retrogenes
retro_chof_1115, retro_chof_2341,
Callithrix jacchus ENSCJAG00000008677 ortholog_one2one 3 retrogenes
retro_cjac_1693, retro_cjac_2840, retro_cjac_786,
Cavia porcellus ENSCPOG00000021812 possible_ortholog 5 retrogenes
retro_cpor_298, retro_cpor_449, retro_cpor_475, retro_cpor_498, retro_cpor_601,
Equus caballus ENSECAG00000015816 possible_ortholog 2 retrogenes
retro_ecab_1090, retro_ecab_585,
Felis catus ENSFCAG00000013354 possible_ortholog 1 retrogene
retro_fcat_441,
Gorilla gorilla ENSGGOG00000026582 ortholog_one2one 5 retrogenes
retro_ggor_1088, retro_ggor_1771, retro_ggor_472, retro_ggor_649, retro_ggor_650,
Myotis lucifugus ENSMLUG00000001970 possible_ortholog 11 retrogenes
retro_mluc_1016, retro_mluc_1460, retro_mluc_1503, retro_mluc_1806, retro_mluc_1966, retro_mluc_2293, retro_mluc_268, retro_mluc_497, retro_mluc_564, retro_mluc_565, retro_mluc_882,
Macaca mulatta ENSMMUG00000009157 ortholog_one2one 2 retrogenes
retro_mmul_2245, retro_mmul_939,
Mus musculus ENSMUSG00000067274 possible_ortholog 2 retrogenes
retro_mmus_143, retro_mmus_2249,
Oryctolagus cuniculus ENSOCUG00000005749 possible_ortholog 2 retrogenes
retro_ocun_293, retro_ocun_376,
Otolemur garnettii ENSOGAG00000003843 ortholog_one2one 4 retrogenes
retro_ogar_2184, retro_ogar_2294, retro_ogar_556, retro_ogar_713,
Procavia capensis ENSPCAG00000016429 ortholog_one2one 6 retrogenes
retro_pcap_232, retro_pcap_314, retro_pcap_339, retro_pcap_353, retro_pcap_408, retro_pcap_67,
Petromyzon marinus ENSPMAG00000001339 ortholog_one2many 1 retrogene
retro_pmar_6,
Pongo abelii ENSPPYG00000005022 ortholog_one2one 5 retrogenes
retro_pabe_2113, retro_pabe_3035, retro_pabe_568, retro_pabe_66, retro_pabe_749,
Rattus norvegicus ENSRNOG00000001148 possible_ortholog 3 retrogenes
retro_rnor_1350, retro_rnor_2092, retro_rnor_2970,
Sarcophilus harrisii ENSSHAG00000001623 possible_ortholog 2 retrogenes
retro_shar_286, retro_shar_413,
Tursiops truncatus ENSTTRG00000005658 ortholog_one2one 1 retrogene
retro_ttru_965,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_512 84.58 86.23
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2. retro_hsap_784 89.82 86.75
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3. retro_hsap_1403 85.78 70.98
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4. retro_hsap_1553 86.73 66.25
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5. retro_hsap_1889 83.33 53.00
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6. retro_hsap_2095 98.11 100.00
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7. retro_hsap_2334 68.38 72.56
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Download FASTA sequences of all ENSG00000089157 retrocopies