RetrogeneDB - Parental gene ENSFCAG00000012284 details

                            
>ENSFCAG00000012284
ATGAAGACCATTCTCAGCAATCAAACTGTCGACATTCCGGAAAATGTCGACATCACTCTCAAGGGACGTACCGTTATTGT

GAAGGGACCCAGAGGAACCCTGCGAAGGGACTTCAATCACATCAATGTAGAACTCAGTCTTCTTGGAAAGAAAAAGAAGA

GGCTCCGTGTTGACAAATGGTGGGGAAATAGAAAAGAACTGGCTACTGTCCGTACTATCTGTAGTCATGTACAGAACATG

ATCAAGGGTGTTACATTGGGCTTCCGTTACAAGATGAGGTCTGTGTATGCCCACTTCCCCATCAACGTTGTTATTCAGGA

GAATGGCTCTCTCGTTGAAATCCGAAATTTCTTGGGTGAGAAATACATACGCAGGGTTCGGATGAGGCCAGGTGTTGCTT

GTTCCGTATCTCAAGCCCAGAAAGATGAGTTAATTCTTGAAGGAAATGACATTGAACTTGTATCAAACTCAGCTGCTTTG

ATTCAGCAAGCCACAACAGTTAAAAACAAGGATATCAGGAAATTTTTGGATGGTATCTATGTTTCTGAAAAAGGAACTGT

TCAGCAGGCTGATGAATAA

Library	Parental gene expression (RPM)
SRP017611_brain	179 .05 RPM
SRP017611_kidney	610 .51 RPM
SRP017611_liver	281 .84 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000007317	ortholog_one2many	1 retrogene	retro_acar_163,
Ailuropoda melanoleuca	ENSAMEG00000003187	possible_ortholog	31 retrogenes	retro_amel_1018, retro_amel_1078, retro_amel_1080, retro_amel_1081, retro_amel_1108, retro_amel_1132, retro_amel_1137, retro_amel_1226, retro_amel_1246, retro_amel_1315, retro_amel_1374, retro_amel_1413, retro_amel_1498, retro_amel_1507, retro_amel_1539, retro_amel_1645, retro_amel_1690, retro_amel_1779, retro_amel_1848, retro_amel_247, retro_amel_256, retro_amel_380, retro_amel_457, retro_amel_652, retro_amel_665, retro_amel_702, retro_amel_727, retro_amel_872, retro_amel_881, retro_amel_951, retro_amel_963,
Bos taurus	ENSBTAG00000014518	possible_ortholog	3 retrogenes	retro_btau_200, retro_btau_231, retro_btau_51,
Canis familiaris	ENSCAFG00000016008	ortholog_one2one	28 retrogenes	retro_cfam_1044, retro_cfam_1334, retro_cfam_1401, retro_cfam_1455, retro_cfam_1565, retro_cfam_1571, retro_cfam_1610, retro_cfam_1693, retro_cfam_1737, retro_cfam_1809, retro_cfam_1922, retro_cfam_1938, retro_cfam_207, retro_cfam_245, retro_cfam_288, retro_cfam_416, retro_cfam_434, retro_cfam_460, retro_cfam_636, retro_cfam_642, retro_cfam_644, retro_cfam_722, retro_cfam_769, retro_cfam_793, retro_cfam_86, retro_cfam_890, retro_cfam_952, retro_cfam_982,
Callithrix jacchus	ENSCJAG00000000723	ortholog_one2one	29 retrogenes	retro_cjac_1075, retro_cjac_1115, retro_cjac_1335, retro_cjac_1589, retro_cjac_1735, retro_cjac_1780, retro_cjac_1872, retro_cjac_2166, retro_cjac_2549, retro_cjac_2554, retro_cjac_2621, retro_cjac_2637, retro_cjac_2741, retro_cjac_2826, retro_cjac_2847, retro_cjac_3069, retro_cjac_3070, retro_cjac_3103, retro_cjac_3134, retro_cjac_3245, retro_cjac_392, retro_cjac_593, retro_cjac_627, retro_cjac_650, retro_cjac_684, retro_cjac_690, retro_cjac_709, retro_cjac_784, retro_cjac_825,
Danio rerio	ENSDARG00000037350	ortholog_one2many	1 retrogene	retro_drer_18,
Dasypus novemcinctus	ENSDNOG00000007411	possible_ortholog	18 retrogenes	retro_dnov_1298, retro_dnov_1560, retro_dnov_1684, retro_dnov_1845, retro_dnov_1877, retro_dnov_1936, retro_dnov_2148, retro_dnov_2277, retro_dnov_2624, retro_dnov_2659, retro_dnov_282, retro_dnov_407, retro_dnov_437, retro_dnov_450, retro_dnov_615, retro_dnov_787, retro_dnov_82, retro_dnov_975,
Equus caballus	ENSECAG00000016489	ortholog_one2one	7 retrogenes	retro_ecab_183, retro_ecab_368, retro_ecab_405, retro_ecab_630, retro_ecab_638, retro_ecab_818, retro_ecab_867,
Erinaceus europaeus	ENSEEUG00000004394	possible_ortholog	39 retrogenes	retro_eeur_11, retro_eeur_136, retro_eeur_153, retro_eeur_162, retro_eeur_184, retro_eeur_191, retro_eeur_229, retro_eeur_246, retro_eeur_27, retro_eeur_279, retro_eeur_280, retro_eeur_282, retro_eeur_296, retro_eeur_307, retro_eeur_352, retro_eeur_383, retro_eeur_399, retro_eeur_410, retro_eeur_429, retro_eeur_433, retro_eeur_449, retro_eeur_453, retro_eeur_461, retro_eeur_471, retro_eeur_486, retro_eeur_493, retro_eeur_51, retro_eeur_540, retro_eeur_572, retro_eeur_590, retro_eeur_599, retro_eeur_600, retro_eeur_619, retro_eeur_624, retro_eeur_65, retro_eeur_670, retro_eeur_678, retro_eeur_68, retro_eeur_98,
Homo sapiens	ENSG00000163682	ortholog_one2one	28 retrogenes	retro_hsap_115, retro_hsap_1318, retro_hsap_1344, retro_hsap_1398, retro_hsap_1554, retro_hsap_1585, retro_hsap_1605, retro_hsap_1606, retro_hsap_1717, retro_hsap_1739, retro_hsap_1840, retro_hsap_1864, retro_hsap_1888, retro_hsap_2048, retro_hsap_2326, retro_hsap_2380, retro_hsap_2867, retro_hsap_3008, retro_hsap_321, retro_hsap_3251, retro_hsap_3303, retro_hsap_3604, retro_hsap_3696, retro_hsap_4023, retro_hsap_4793, retro_hsap_666, retro_hsap_773, retro_hsap_802,
Gorilla gorilla	ENSGGOG00000022799	ortholog_one2one	26 retrogenes	retro_ggor_1029, retro_ggor_1084, retro_ggor_1114, retro_ggor_1180, retro_ggor_1204, retro_ggor_1286, retro_ggor_1311, retro_ggor_1328, retro_ggor_1383, retro_ggor_1476, retro_ggor_1805, retro_ggor_1854, retro_ggor_1985, retro_ggor_2148, retro_ggor_219, retro_ggor_2212, retro_ggor_2260, retro_ggor_2431, retro_ggor_2498, retro_ggor_2499, retro_ggor_2700, retro_ggor_347, retro_ggor_392, retro_ggor_577, retro_ggor_641, retro_ggor_660,
Gadus morhua	ENSGMOG00000001002	ortholog_one2many	1 retrogene	retro_gmor_28,
Loxodonta africana	ENSLAFG00000012021	ortholog_one2many	38 retrogenes	retro_lafr_1009, retro_lafr_1020, retro_lafr_1047, retro_lafr_1095, retro_lafr_1106, retro_lafr_1126, retro_lafr_1145, retro_lafr_1147, retro_lafr_1151, retro_lafr_1174, retro_lafr_1205, retro_lafr_1224, retro_lafr_1225, retro_lafr_1254, retro_lafr_139, retro_lafr_216, retro_lafr_229, retro_lafr_232, retro_lafr_246, retro_lafr_29, retro_lafr_310, retro_lafr_317, retro_lafr_373, retro_lafr_423, retro_lafr_451, retro_lafr_470, retro_lafr_495, retro_lafr_561, retro_lafr_569, retro_lafr_590, retro_lafr_644, retro_lafr_657, retro_lafr_735, retro_lafr_744, retro_lafr_857, retro_lafr_889, retro_lafr_934, retro_lafr_95,
Macropus eugenii	ENSMEUG00000016722	ortholog_many2many	8 retrogenes	retro_meug_1087, retro_meug_1411, retro_meug_1961, retro_meug_22, retro_meug_440, retro_meug_490, retro_meug_650, retro_meug_763,
Microcebus murinus	ENSMICG00000016778	ortholog_one2one	18 retrogenes	retro_mmur_105, retro_mmur_1141, retro_mmur_1183, retro_mmur_1201, retro_mmur_121, retro_mmur_1292, retro_mmur_1418, retro_mmur_1472, retro_mmur_16, retro_mmur_277, retro_mmur_307, retro_mmur_465, retro_mmur_531, retro_mmur_574, retro_mmur_599, retro_mmur_668, retro_mmur_704, retro_mmur_768,
Myotis lucifugus	ENSMLUG00000004597	possible_ortholog	34 retrogenes	retro_mluc_1028, retro_mluc_1029, retro_mluc_1261, retro_mluc_1269, retro_mluc_127, retro_mluc_1320, retro_mluc_1368, retro_mluc_1380, retro_mluc_1572, retro_mluc_1655, retro_mluc_1704, retro_mluc_1757, retro_mluc_1813, retro_mluc_1858, retro_mluc_1880, retro_mluc_1983, retro_mluc_2041, retro_mluc_2067, retro_mluc_2112, retro_mluc_2119, retro_mluc_220, retro_mluc_2229, retro_mluc_223, retro_mluc_2230, retro_mluc_2370, retro_mluc_2428, retro_mluc_2495, retro_mluc_2611, retro_mluc_293, retro_mluc_461, retro_mluc_533, retro_mluc_648, retro_mluc_75, retro_mluc_895,
Macaca mulatta	ENSMMUG00000008553	ortholog_one2many	22 retrogenes	retro_mmul_1053, retro_mmul_1076, retro_mmul_1097, retro_mmul_1220, retro_mmul_1259, retro_mmul_1272, retro_mmul_1316, retro_mmul_1336, retro_mmul_1404, retro_mmul_1513, retro_mmul_1714, retro_mmul_180, retro_mmul_1924, retro_mmul_2044, retro_mmul_2070, retro_mmul_2167, retro_mmul_2177, retro_mmul_2185, retro_mmul_321, retro_mmul_345, retro_mmul_833, retro_mmul_961,
Monodelphis domestica	ENSMODG00000020553	ortholog_one2many	7 retrogenes	retro_mdom_1026, retro_mdom_1078, retro_mdom_1261, retro_mdom_1352, retro_mdom_1414, retro_mdom_401, retro_mdom_637,
Nomascus leucogenys	ENSNLEG00000017100	ortholog_one2one	26 retrogenes	retro_nleu_1308, retro_nleu_1400, retro_nleu_1417, retro_nleu_1469, retro_nleu_1700, retro_nleu_1723, retro_nleu_174, retro_nleu_1764, retro_nleu_1829, retro_nleu_2064, retro_nleu_2072, retro_nleu_2223, retro_nleu_2490, retro_nleu_2568, retro_nleu_2634, retro_nleu_2718, retro_nleu_2799, retro_nleu_2832, retro_nleu_367, retro_nleu_400, retro_nleu_410, retro_nleu_610, retro_nleu_660, retro_nleu_707, retro_nleu_755, retro_nleu_806,
Otolemur garnettii	ENSOGAG00000004935	possible_ortholog	20 retrogenes	retro_ogar_117, retro_ogar_1223, retro_ogar_1471, retro_ogar_1614, retro_ogar_1694, retro_ogar_1807, retro_ogar_1884, retro_ogar_1906, retro_ogar_1933, retro_ogar_2162, retro_ogar_2173, retro_ogar_2806, retro_ogar_3036, retro_ogar_3115, retro_ogar_3276, retro_ogar_329, retro_ogar_429, retro_ogar_864, retro_ogar_886, retro_ogar_963,
Pongo abelii	ENSPPYG00000014675	ortholog_one2one	10 retrogenes	retro_pabe_1117, retro_pabe_1157, retro_pabe_1433, retro_pabe_1521, retro_pabe_1523, retro_pabe_162, retro_pabe_2148, retro_pabe_2372, retro_pabe_2695, retro_pabe_3155,
Pteropus vampyrus	ENSPVAG00000000919	possible_ortholog	49 retrogenes	retro_pvam_1025, retro_pvam_111, retro_pvam_1126, retro_pvam_1153, retro_pvam_1181, retro_pvam_1195, retro_pvam_1199, retro_pvam_1215, retro_pvam_1227, retro_pvam_1258, retro_pvam_1273, retro_pvam_1286, retro_pvam_1310, retro_pvam_1373, retro_pvam_1398, retro_pvam_1421, retro_pvam_1470, retro_pvam_175, retro_pvam_178, retro_pvam_185, retro_pvam_273, retro_pvam_304, retro_pvam_324, retro_pvam_325, retro_pvam_341, retro_pvam_37, retro_pvam_372, retro_pvam_42, retro_pvam_437, retro_pvam_457, retro_pvam_46, retro_pvam_461, retro_pvam_472, retro_pvam_482, retro_pvam_516, retro_pvam_586, retro_pvam_621, retro_pvam_622, retro_pvam_702, retro_pvam_744, retro_pvam_850, retro_pvam_900, retro_pvam_920, retro_pvam_949, retro_pvam_957, retro_pvam_961, retro_pvam_982, retro_pvam_986, retro_pvam_998,
Sarcophilus harrisii	ENSSHAG00000004918	ortholog_one2many	8 retrogenes	retro_shar_191, retro_shar_192, retro_shar_236, retro_shar_340, retro_shar_359, retro_shar_406, retro_shar_600, retro_shar_607,
Sus scrofa	ENSSSCG00000025192	ortholog_one2one	15 retrogenes	retro_sscr_1018, retro_sscr_1021, retro_sscr_1065, retro_sscr_1091, retro_sscr_1160, retro_sscr_1196, retro_sscr_1199, retro_sscr_272, retro_sscr_316, retro_sscr_411, retro_sscr_826, retro_sscr_886, retro_sscr_920, retro_sscr_921, retro_sscr_972,
Tupaia belangeri	ENSTBEG00000006042	ortholog_one2many	18 retrogenes	retro_tbel_1061, retro_tbel_142, retro_tbel_1761, retro_tbel_18, retro_tbel_1852, retro_tbel_2152, retro_tbel_28, retro_tbel_2902, retro_tbel_2937, retro_tbel_30, retro_tbel_325, retro_tbel_340, retro_tbel_3744, retro_tbel_4288, retro_tbel_44, retro_tbel_4430, retro_tbel_4492, retro_tbel_995,
Vicugna pacos	ENSVPAG00000002023	possible_ortholog	1 retrogene	retro_vpac_11,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_fcat_160	74.75	51.04	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_fcat_167	57.14	65.62	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_fcat_169	73.20	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_fcat_272	78.02	93.75	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_fcat_330	76.64	55.73	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_fcat_341	60.28	72.40	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_fcat_356	55.73	68.23	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_fcat_403	74.61	100.00	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_fcat_491	71.82	56.77	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_fcat_651	63.64	73.96	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_fcat_744	71.04	93.23	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_fcat_747	72.36	64.06	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_fcat_748	71.03	55.73	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_fcat_788	82.14	57.29	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_fcat_871	51.18	65.62	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_fcat_874	67.36	98.44	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_fcat_880	62.75	53.12	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_fcat_914	72.54	100.00	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_fcat_1010	70.54	67.19	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_fcat_1076	66.39	62.50	Please wait, loading	Please wait, loading	Please wait, loading
21.	retro_fcat_1093	72.82	100.00	Please wait, loading	Please wait, loading	Please wait, loading
22.	retro_fcat_1121	74.26	51.04	Please wait, loading	Please wait, loading	Please wait, loading
23.	retro_fcat_1183	81.54	66.67	Please wait, loading	Please wait, loading	Please wait, loading
24.	retro_fcat_1304	77.21	70.31	Please wait, loading	Please wait, loading	Please wait, loading
25.	retro_fcat_1329	80.95	98.44	Please wait, loading	Please wait, loading	Please wait, loading
26.	retro_fcat_1531	75.84	77.08	Please wait, loading	Please wait, loading	Please wait, loading
27.	retro_fcat_1541	71.53	70.83	Please wait, loading	Please wait, loading	Please wait, loading
28.	retro_fcat_1560	68.75	75.00	Please wait, loading	Please wait, loading	Please wait, loading
29.	retro_fcat_1597	79.17	61.98	Please wait, loading	Please wait, loading	Please wait, loading
30.	retro_fcat_1623	77.32	100.00	Please wait, loading	Please wait, loading	Please wait, loading
31.	retro_fcat_1675	73.08	67.19	Please wait, loading	Please wait, loading	Please wait, loading
32.	retro_fcat_1700	75.72	89.58	Please wait, loading	Please wait, loading	Please wait, loading
33.	retro_fcat_1786	73.33	99.48	Please wait, loading	Please wait, loading	Please wait, loading
34.	retro_fcat_1828	61.98	61.46	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSFCAG00000012284 retrocopies

Parental gene:	RPL9, ENSFCAG00000012284
Aliases:	None
Description:	ribosomal protein L9 [Source:HGNC Symbol;Acc:10369]
Organism:	*Cat (Felis catus)*
Coordinates:	B1:172477467..172482308(+)

Parental gene:

RPL9, ENSFCAG00000012284