Parental gene:

RPS18, ENSFCAG00000004013

Aliases:None
Description:ribosomal protein S18 [Source:HGNC Symbol;Acc:10401]
Organism:Cat (Felis catus)
Coordinates:B2:34845976..34850529(+)


>ENSFCAG00000004013
CAGTCTCTAGTAATCCCTGAGAAGTTCCAGCACATTTTGCGAGTACTCAACACCAATATCGATGGGCGGCGGAAGATAGC
CTTTGCCATCACTGCAATTAAGGGTGTAGGGCGAAGATATGCTCATGTGGTGTTGAGGAAAGCAGACATCGATCTCACCA
AGAGGGCAGGAGAGCTCACTGAGGATGAGGTAGAACGTGTGATCACCATTATGCAGAATCCACGCCAGTATAAGATCCCA
GACTGGTTTTTGAACAGACAAAAGGATGTGAAGGATGGAAAATACAGCCAGGTCCTGGCCAATGGTCTGGATAACAAACT
CCGTGAAGACCTGGAACGACTGAAAAAGATTCGGGCCCACAGAGGGCTGCGCCACTTCTGGGGACTTCGTGTCCGAGGCC
AGCACACCAAGACCACAGGCCGCAGGGGCCGCACCGTGGGTGTGTCCAAGAAGAAATAA

Library Parental gene expression (RPM)
SRP017611_brain 116 .49 RPM
SRP017611_kidney 336 .48 RPM
SRP017611_liver 218 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000002918 ortholog_one2one 1 retrogene
retro_acar_206,
Ailuropoda melanoleuca ENSAMEG00000001623 ortholog_one2one 2 retrogenes
retro_amel_1617, retro_amel_381,
Cavia porcellus ENSCPOG00000019675 ortholog_one2one 4 retrogenes
retro_cpor_1044, retro_cpor_130, retro_cpor_860, retro_cpor_971,
Gorilla gorilla ENSGGOG00000006571 possible_ortholog 5 retrogenes
retro_ggor_1496, retro_ggor_2310, retro_ggor_344, retro_ggor_77, retro_ggor_93,
Loxodonta africana ENSLAFG00000032173 possible_ortholog 1 retrogene
retro_lafr_1171,
Myotis lucifugus ENSMLUG00000007360 ortholog_one2one 2 retrogenes
retro_mluc_181, retro_mluc_932,
Macaca mulatta ENSMMUG00000003867 possible_ortholog 1 retrogene
retro_mmul_2198,
Mustela putorius furo ENSMPUG00000002306 ortholog_one2one 6 retrogenes
retro_mputfur_1110, retro_mputfur_1204, retro_mputfur_399, retro_mputfur_687, retro_mputfur_888, retro_mputfur_943,
Oryctolagus cuniculus ENSOCUG00000010546 ortholog_one2one 1 retrogene
retro_ocun_31,
Pongo abelii ENSPPYG00000025953 possible_ortholog 14 retrogenes
retro_pabe_1138, retro_pabe_128, retro_pabe_1481, retro_pabe_1482, retro_pabe_1813, retro_pabe_1881, retro_pabe_2303, retro_pabe_2407, retro_pabe_2663, retro_pabe_2833, retro_pabe_2967, retro_pabe_3013, retro_pabe_3070, retro_pabe_368,
Pan troglodytes ENSPTRG00000018039 possible_ortholog 1 retrogene
retro_ptro_121,
Rattus norvegicus ENSRNOG00000028505 possible_ortholog 4 retrogenes
retro_rnor_102, retro_rnor_234, retro_rnor_29, retro_rnor_70,
Sarcophilus harrisii ENSSHAG00000006857 possible_ortholog 2 retrogenes
retro_shar_265, retro_shar_563,
Sarcophilus harrisii ENSSHAG00000008658 possible_ortholog 1 retrogene
retro_shar_618,
Ictidomys tridecemlineatus ENSSTOG00000002417 ortholog_one2one 13 retrogenes
retro_itri_1023, retro_itri_1049, retro_itri_1121, retro_itri_1316, retro_itri_1484, retro_itri_228, retro_itri_397, retro_itri_547, retro_itri_690, retro_itri_742, retro_itri_854, retro_itri_875, retro_itri_878,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_166 62.79 84.21
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2. retro_fcat_222 63.71 78.95
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3. retro_fcat_313 82.11 61.18
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4. retro_fcat_327 57.94 69.08
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5. retro_fcat_430 79.61 99.34
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6. retro_fcat_1058 63.85 84.87
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7. retro_fcat_1536 65.49 73.03
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Download FASTA sequences of all ENSFCAG00000004013 retrocopies