Parental gene:

ENSEEUG00000004274

Aliases:None
Description:None
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:scaffold_370350:42008..78648(-)


>ENSEEUG00000004274
ATGGTCGTGCTTTCAGTGCCCGCCGAAGTCACTGTCATCCTGTTAGATATCGAAACCACAACCCCGATTGCTTTCGTGAA
GGATATTTTATTTCCTTACATCAAGGAAAATGTTGAAGAGTATCTGCAGACACATTGGGAGGAAGAGGAGTGCCAGCNNN
NNNNNNNNNNNNNNNNNNNNNNNGCTGAAGAGGACTCTCACCTGGACGGCGCTGTCCCCATCCCAGTGGCTCGTGGGAAT
AGTGCCGAAGACCTGCAGCAGACCATCCAGGCTGTGGTGGATAATGTCCACTGGCAGATGTCCCTGGACCGGAAGACCAC
AGCTCTGAAACAGCTGCAGGGCCACATGTGGAGGGCAGCGTTCACAGCTGGGTGCATAAAAGCAGAGTTCTTTGAAGATG
TAGTTCCAGCAGTCAGGAAATGGAGAGAGGCTGGAATAAAGGTATATATCTATTCTTCAGGGAGTGTGGAGGCCCAGAAG
TTATTATTTGGGCATTCTACAGAAGGAGATATTCTTGAGCTTGTTGATGGTCACTTTGACACCAAGATTGGACACAAAGT
GGAGAGTGAGAGTTACCGAAAGATTGCCAACAGCATTGGATGTTCAACCAACAACATCTTGTTTTTGACAGATGTTACTC
GTGAGGCCAGTGCTGCTGAGGAAGCAGACATGCACGTGGCTGTGGTGGTGAGACCAGGCAATGCAGGGTTAACAGACGAT
GAGAAGACATACTACAGCCTCATCACATCCTTCAGCGAACTATGCCTGCCTTCCTCAGCTTAG

Library Parental gene expression (RPM)
SRP017611_brain 29 .49 RPM
SRP017611_kidney 9 .75 RPM
SRP017611_liver 3 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005140 ortholog_one2many 2 retrogenes
retro_amel_1186, retro_amel_930,
Choloepus hoffmanni ENSCHOG00000003283 ortholog_one2many 4 retrogenes
retro_chof_2150, retro_chof_470, retro_chof_486, retro_chof_596,
Callithrix jacchus ENSCJAG00000015251 ortholog_one2many 2 retrogenes
retro_cjac_1376, retro_cjac_2375,
Equus caballus ENSECAG00000019612 ortholog_one2many 1 retrogene
retro_ecab_164,
Homo sapiens ENSG00000145293 ortholog_one2many 1 retrogene
retro_hsap_2900,
Gorilla gorilla ENSGGOG00000003719 ortholog_one2many 1 retrogene
retro_ggor_2010,
Loxodonta africana ENSLAFG00000008619 ortholog_one2many 1 retrogene
retro_lafr_1158,
Macropus eugenii ENSMEUG00000011458 ortholog_one2many 1 retrogene
retro_meug_1125,
Myotis lucifugus ENSMLUG00000014460 ortholog_one2many 1 retrogene
retro_mluc_2504,
Otolemur garnettii ENSOGAG00000002502 ortholog_one2many 1 retrogene
retro_ogar_1549,
Pongo abelii ENSPPYG00000014887 ortholog_one2many 1 retrogene
retro_pabe_2399,
Pan troglodytes ENSPTRG00000016218 ortholog_one2many 1 retrogene
retro_ptro_1960,
Ictidomys tridecemlineatus ENSSTOG00000013987 ortholog_one2many 2 retrogenes
retro_itri_1067, retro_itri_1587,
Tursiops truncatus ENSTTRG00000001800 ortholog_one2many 1 retrogene
retro_ttru_1231,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_563 90.18 62.69
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Download FASTA sequences of all ENSEEUG00000004274 retrocopies