Parental gene:

AKIRIN1, ENSEEUG00000004136

Aliases:None
Description:akirin 1 [Source:HGNC Symbol;Acc:25744]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_7260:9748..18205(+)


>ENSEEUG00000004136
ATGGCGTGCGGGGCGACGTTGAAGCGGCCTATGGAGTTCGAGGCGGCGCTGCTGAGCCCCGGCTCCCCGAAGCGGCGGCG
CTGCGCCCCTCTGCCCGGCGCCACTCCGGGCCTCAGGCCCCCGGACGCCGAGCCGCCGCCGCCGCTGTTTCAGACGCAGA
CCCTCCCGCCGACTCTGCAGCAGCCCGCCCCGCTCGGCAGCGAGCGGCGCCTTCCAACTCCGGAGCAAATTTTTCAGAAC
ATAAAACAAGAATATAGTCGTTATCAGAGGTGGAGACATTTAGAAGTTGTCCTTAATCAGAGCGAAGCTTGTACTTCAGA
AAGTCAGTCTCACTCCTCAGCACTCACAGCACCAAGTTCTCCAGGCTCTTCCTGGATGAAGAAAGACCAGCCCACCTTTA
CCCTCCGGCAAGTTGGAATAATATGTGAACGTCTCTTAAAAGACTATGAAGATAAAATTCGGGAGGAATATGAGCAAATC
CTCAACACCAAACTAGCAGAACAATATGAATCTTTTGTGAAATTCACACATGATCAGATTATGCGACGATATGGGACTAG
GCCAACAAGCTATGTGTCCTGA

Library Parental gene expression (RPM)
SRP017611_brain 13 .21 RPM
SRP017611_kidney 23 .07 RPM
SRP017611_liver 7 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004715 ortholog_one2one 1 retrogene
retro_btau_853,
Canis familiaris ENSCAFG00000003186 ortholog_one2one 4 retrogenes
retro_cfam_1099, retro_cfam_1915, retro_cfam_2086, retro_cfam_810,
Choloepus hoffmanni ENSCHOG00000003010 ortholog_one2one 3 retrogenes
retro_chof_1529, retro_chof_624, retro_chof_672,
Callithrix jacchus ENSCJAG00000002309 ortholog_one2one 3 retrogenes
retro_cjac_1460, retro_cjac_3694, retro_cjac_4071,
Cavia porcellus ENSCPOG00000015419 ortholog_one2one 1 retrogene
retro_cpor_1232,
Dasypus novemcinctus ENSDNOG00000000332 ortholog_one2one 3 retrogenes
retro_dnov_1265, retro_dnov_1828, retro_dnov_509,
Dipodomys ordii ENSDORG00000009324 ortholog_one2one 2 retrogenes
retro_dord_121, retro_dord_436,
Equus caballus ENSECAG00000012589 ortholog_one2many 1 retrogene
retro_ecab_108,
Echinops telfairi ENSETEG00000006751 ortholog_one2one 1 retrogene
retro_etel_336,
Homo sapiens ENSG00000174574 ortholog_one2one 1 retrogene
retro_hsap_4692,
Gorilla gorilla ENSGGOG00000006053 ortholog_one2one 1 retrogene
retro_ggor_2920,
Macropus eugenii ENSMEUG00000011154 ortholog_one2one 1 retrogene
retro_meug_2030,
Monodelphis domestica ENSMODG00000017703 ortholog_one2one 1 retrogene
retro_mdom_1466,
Mustela putorius furo ENSMPUG00000014440 ortholog_one2one 1 retrogene
retro_mputfur_1389,
Mus musculus ENSMUSG00000023075 ortholog_one2one 1 retrogene
retro_mmus_733,
Nomascus leucogenys ENSNLEG00000011849 ortholog_one2one 1 retrogene
retro_nleu_2363,
Oryctolagus cuniculus ENSOCUG00000005500 ortholog_one2many 1 retrogene
retro_ocun_140,
Otolemur garnettii ENSOGAG00000007962 ortholog_one2one 2 retrogenes
retro_ogar_445, retro_ogar_674,
Pongo abelii ENSPPYG00000001511 ortholog_one2one 2 retrogenes
retro_pabe_3137, retro_pabe_3646,
Sarcophilus harrisii ENSSHAG00000017458 ortholog_one2one 1 retrogene
retro_shar_577,
Ictidomys tridecemlineatus ENSSTOG00000023219 ortholog_one2one 1 retrogene
retro_itri_427,
Tarsius syrichta ENSTSYG00000003345 ortholog_one2one 1 retrogene
retro_tsyr_139,
Tursiops truncatus ENSTTRG00000002293 ortholog_one2one 2 retrogenes
retro_ttru_1848, retro_ttru_513,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_257 79.13 59.07
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2. retro_eeur_422 68.38 60.62
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3. retro_eeur_703 83.64 56.48
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Download FASTA sequences of all ENSEEUG00000004136 retrocopies