Parental gene:

PCED1A, ENSCPOG00000025475

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_8:21777615..21781827(+)


>ENSCPOG00000025475
ATGGTCTTCTGTCTGGAAAACGAGATTCCGTGCCGCCCGCTGCGAAGCGCCATGGTCCACATCCAAGCCTCAGAAGTCCA
GCAGCTGCTACACAACAAGTTCGTGGTCATCTTGGGGGACTCCATCCAGAGAGCTGTATATAAGGACCTGGTGCTTCTGC
TTCAGAAAGACTCACTGCTCACAGTTGCCCAGTTGAAAGCCAAGGGGGAGCTGAGCTTTGAACAGGACCAGCTGGTGGCT
GGGGGCCAGCTGGGTGAGCTGCACAACGGGACACAGTATCGTGAAGTCCGCCAGTTCTGCTCGGGTTCTGGCCATCACCT
TGTACGCTTCTACTTCCTCACCCGAGTTTACTCCGAGTACCTGGAGGATGTCCTGGAGGAGCTGACATATGGGCCTGCCC
CGGACCTGGTGATCATCAACTCTTGCCTTTGGGATCTCTCCAGGTATGGCCGCTGCTCAATGGAGAGCTACCGAGAGAAC
TTGGAACGAGTGTTCGTACGCATGGACCAGGTGTTGCCAGACTCCTGTCTGCTGGTGTGGAACATGGCAATGCCCCTGGG
GGAGCGTGTCACTGGGGGTTTCCTACTGCCAGAGCTCCAGCCCCTCGCAGCCACATTGCGACGGGATGTGGTTGAGGGGA
ACTTCTACAGTGCTACCCTGGCTGGTGACCACTACTTCGATGTTTTGGATCTTCACTTTCATTTCCGGCATGCAGTACAG
CACCGTCATCGAGATGGTGTCCACTGGGACCAACATGCACACCGTCACCTCTCACACTTGCTTCTGACCCATGTGGCCGA
TGCCTGGGGTGTGGAGCTGCCTAAGCGGGACCATCCCCCTGACCCATGGATTGAGGACTGGCCAGAGATGGATCATCAGT
TCCAGGGAAGCCATAGGCAGCCCCCAGACTTCGGGGAGCAACTGCAGGATGCCCCTTTCTACCCAGGCCAGCCCTTCCCA
CCCCAGGAATTCTTCAGTTATAATCCAATGGAAGACTTCTCGATGCCTCTCAATTTAGGGTGTGGCCCTGGAGTGAACTT
TGCACCTAGCCCCCTGCCACCTCCAGTTCCTGGCTCTGTCTCCCACGGTCAGCACCGGGGCCCAGTGGTCCACCGGGGGA
TGCCACGCTGTGTTCTCAATAGCCCCTACCATGTGCCAAGGTTGGGGGTGCCCAGCAGGCAGCGACTCAGGCACTCAGAC
AGATTGATCCACACATACAAACTGGACAGGCGGGGACATACCCATTCAGGAACATGGCCAGGCTAG

Library Parental gene expression (RPM)
SRP017611_brain 22 .20 RPM
SRP017611_kidney 12 .98 RPM
SRP017611_liver 4 .09 RPM
SRP040447_lung 14 .20 RPM
SRP040447_skeletal_muscle 5 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003863 ortholog_one2one 1 retrogene
retro_btau_182,
Equus caballus ENSECAG00000016497 ortholog_one2one 1 retrogene
retro_ecab_87,
Felis catus ENSFCAG00000002886 ortholog_one2one 1 retrogene
retro_fcat_18,
Homo sapiens ENSG00000132635 ortholog_one2one 2 retrogenes
retro_hsap_2207, retro_hsap_82,
Microcebus murinus ENSMICG00000016578 ortholog_one2one 2 retrogenes
retro_mmur_163, retro_mmur_278,
Myotis lucifugus ENSMLUG00000028662 ortholog_one2one 2 retrogenes
retro_mluc_222, retro_mluc_647,
Macaca mulatta ENSMMUG00000005200 ortholog_one2one 2 retrogenes
retro_mmul_333, retro_mmul_341,
Mus musculus ENSMUSG00000037773 ortholog_one2one 2 retrogenes
retro_mmus_1001, retro_mmus_332,
Otolemur garnettii ENSOGAG00000004701 ortholog_one2one 1 retrogene
retro_ogar_81,
Pongo abelii ENSPPYG00000010833 ortholog_one2one 2 retrogenes
retro_pabe_192, retro_pabe_2080,
Pan troglodytes ENSPTRG00000013185 ortholog_one2one 1 retrogene
retro_ptro_105,
Pteropus vampyrus ENSPVAG00000006834 ortholog_one2one 1 retrogene
retro_pvam_9,
Sus scrofa ENSSSCG00000007168 ortholog_one2one 1 retrogene
retro_sscr_23,
Ictidomys tridecemlineatus ENSSTOG00000016356 ortholog_one2one 2 retrogenes
retro_itri_1190, retro_itri_783,
Tursiops truncatus ENSTTRG00000003464 ortholog_one2one 1 retrogene
retro_ttru_16,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_79 68.22 61.05
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2. retro_cpor_343 63.30 63.18
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Download FASTA sequences of all ENSCPOG00000025475 retrocopies