Parental gene:

ARL2BP, ENSCPOG00000011406

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_22:24818565..24822446(-)


>ENSCPOG00000011406
ATGGACGCCCTGGAGGAGGAGAACTTGGCCCTGTCCTTCTCCTCTGCCTCTGATGCAGAATTTGATGCTGTGGTTGGATA
CTTAGAGGACATTATCATGGATGATGAGTTCCAGTTACTACAGAGAAATTTCATGGACAAGTACTACCAGGAATTTGAAG
ACACAGAGGAGAATAAACTCACCTACACACCCATTTTTAATGAATATATTTCTCTAGTGGAAAAGTACATTGAGGAGCAG
CTGCTGGAGCGGATCCCAGGGTTCAGCATGGCGGCCTTCACTACAACATTACAGCACCATAAAGATGAAGTAGCTGGTGA
CATCTTTGACATGTTACTCACGTTTACAGACTTTCTGGCTTTTAAAGAAATGTTTCTGGACTACAGAGCAGAAAAGGAAG
GCCGGGGACTGGATTTAAGCAGTGGCTTAGTGGTGACATCATTGTGCAAATCCTCTCCTGTGCCAGCTTCCCAGAACAAT
CTGCGGCACTAG

Library Parental gene expression (RPM)
SRP017611_brain 28 .64 RPM
SRP017611_kidney 13 .09 RPM
SRP017611_liver 8 .57 RPM
SRP040447_lung 17 .23 RPM
SRP040447_skeletal_muscle 8 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000012116 ortholog_one2many 9 retrogenes
retro_cjac_1766, retro_cjac_1920, retro_cjac_1928, retro_cjac_2548, retro_cjac_2580, retro_cjac_2698, retro_cjac_4074, retro_cjac_625, retro_cjac_689,
Equus caballus ENSECAG00000016621 possible_ortholog 3 retrogenes
retro_ecab_307, retro_ecab_344, retro_ecab_754,
Felis catus ENSFCAG00000002937 possible_ortholog 3 retrogenes
retro_fcat_400, retro_fcat_69, retro_fcat_974,
Homo sapiens ENSG00000102931 ortholog_one2one 7 retrogenes
retro_hsap_1189, retro_hsap_1846, retro_hsap_3237, retro_hsap_3263, retro_hsap_3270, retro_hsap_4293, retro_hsap_999,
Gorilla gorilla ENSGGOG00000005471 ortholog_one2one 5 retrogenes
retro_ggor_2159, retro_ggor_2202, retro_ggor_2222, retro_ggor_2868, retro_ggor_927,
Loxodonta africana ENSLAFG00000008633 possible_ortholog 3 retrogenes
retro_lafr_103, retro_lafr_228, retro_lafr_418,
Microcebus murinus ENSMICG00000012467 possible_ortholog 6 retrogenes
retro_mmur_1066, retro_mmur_1385, retro_mmur_1444, retro_mmur_1515, retro_mmur_247, retro_mmur_499,
Myotis lucifugus ENSMLUG00000012680 ortholog_one2one 3 retrogenes
retro_mluc_1338, retro_mluc_1843, retro_mluc_746,
Macaca mulatta ENSMMUG00000020352 ortholog_one2many 7 retrogenes
retro_mmul_1260, retro_mmul_2037, retro_mmul_2055, retro_mmul_2059, retro_mmul_223, retro_mmul_2232, retro_mmul_2458,
Monodelphis domestica ENSMODG00000013511 ortholog_one2one 1 retrogene
retro_mdom_1182,
Nomascus leucogenys ENSNLEG00000002803 ortholog_one2one 7 retrogenes
retro_nleu_1050, retro_nleu_1939, retro_nleu_1946, retro_nleu_2114, retro_nleu_2332, retro_nleu_2428, retro_nleu_955,
Oryctolagus cuniculus ENSOCUG00000000582 ortholog_one2one 1 retrogene
retro_ocun_431,
Ochotona princeps ENSOPRG00000006931 ortholog_one2one 2 retrogenes
retro_opri_675, retro_opri_98,
Pongo abelii ENSPPYG00000007384 ortholog_one2one 8 retrogenes
retro_pabe_1318, retro_pabe_1348, retro_pabe_1453, retro_pabe_2684, retro_pabe_2704, retro_pabe_3498, retro_pabe_843, retro_pabe_990,
Pan troglodytes ENSPTRG00000008150 ortholog_one2one 7 retrogenes
retro_ptro_1231, retro_ptro_2189, retro_ptro_2207, retro_ptro_2910, retro_ptro_2948, retro_ptro_752, retro_ptro_816,
Rattus norvegicus ENSRNOG00000016991 ortholog_one2one 1 retrogene
retro_rnor_780,
Sorex araneus ENSSARG00000005442 ortholog_one2one 1 retrogene
retro_sara_190,
Ictidomys tridecemlineatus ENSSTOG00000010254 possible_ortholog 1 retrogene
retro_itri_638,
Tupaia belangeri ENSTBEG00000014441 ortholog_one2many 1 retrogene
retro_tbel_2991,
Tarsius syrichta ENSTSYG00000004923 ortholog_one2many 10 retrogenes
retro_tsyr_1003, retro_tsyr_1066, retro_tsyr_1205, retro_tsyr_1728, retro_tsyr_1755, retro_tsyr_1958, retro_tsyr_2144, retro_tsyr_28, retro_tsyr_298, retro_tsyr_351,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_203 69.64 66.87
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2. retro_cpor_249 73.65 99.39
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3. retro_cpor_299 95.12 100.00
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4. retro_cpor_571 64.29 66.87
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5. retro_cpor_1501 72.05 98.77
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Download FASTA sequences of all ENSCPOG00000011406 retrocopies