Parental gene:

RSL1D1, ENSCPOG00000010630

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_4:30743884..30758109(-)


>ENSCPOG00000010630
CAGATTAGAAAGGCAGTGGAAGCTTTGTTGACACAGTCGAAATCCAGGAAGAACAAAAATGGATTGCTTTTAAATGAAAA
TGAAAGTTTATTTTTAATGGTGGTGCTGTGGAAAATTCCAGGAAAAGAACTGAAGGTCAAATTGTTGTTGCCTCATCATA
TTCGATCAGACTTGTCAGAAATCTGTTTATTTACCAAGGATGAACTCCAGTCAGCTGAACAGACAGAACGCTTCTATAGA
AAGCTTTTGAACAAGCATGGAATTAAAACAATTTCTCGGATTATCCCTTTCCGAACTTTGAAAACAGAATATAAAGCTTA
TGAATCCAAGCTCCAACTCCTAAATAGTTTTGACTTCTTCCTTACTGATGAAAGAATTAGGCGACTTCTGCCCTCACACA
TAGGGAGACATTTCTATCAAAGGAAAAAAGTTCCAGTATCTGTAAACCTTCTGGCCAAGAATTTATCAGAAGAGATCAAC
AACTCCCTAGGTGGGACTGTCTTAAACATCTCCAAAAGTGGTTCTTGCAGTTCTGTACGCATTGGTCACACTGGAATGCG
GGCTCAAGACATCACTGAAAACATTGTTGCTGTGGCAGAAGGTCTTTCAAAAAAATTGCCAGAGAAGTGGGAAAGTGTGA
AACTCCTGTTCGTGAAAACTGGGAAGTCAGTTTCCCTCCCCATTTTTTCTTCGTTTGTCTCTTGTCAGAATGAAACCAAC
AAAATGTTAATTCGTAAGCTGAAGGAAAAAGAGGCTAAGAGAAAAGAGAAAGAACAAAAACTTCGTGAAAAACGGAAGTT
GAAGAAGGAAAAGAGAAAGTTAAAGGGAAAAGCTAAGAAGGTTACATCAGTCCTAACTAAAGGTGGCGTGGCACCTCAAA
CTAAAGGTGCTTCTGCAAAGAGCCGTAGGTCCCAGAAGAAAAAGACTGGGAAAGTAAAAACCCAAGTTAAAGTGACCAAT
GAATCTGATGATGAAATTCCACAACTGGTACCAATAGGCGAAACTCCAGTAAAAGAAAATGTTGAGGTACAGAAACATAT
CACAGGGAAGAAGTCTCCAAAAAAGAGTCCTGGTCCCAAAACACCTCAGGGCAAGAAAAGAAAGGCTCTGCCAGTTCCTG
AGATCCCAGATGCAGGTCCAGGGAAGAAGCCAAAAATGGGACAGGAGAAGCAAAGAAAATCCTCACCAGGAAAGAAAGAT
CTGAGACAGACTCCAAAAAAGCCAGAGGCCAAGCTCTTCACCACTGCTAATAAATCTACAAGGAAAGCTCCCCAAACCCC
TAAACAATTACCAAAAGAATCCAAAGTGCCCCAGTCA

Library Parental gene expression (RPM)
SRP017611_brain 31 .23 RPM
SRP017611_kidney 35 .70 RPM
SRP017611_liver 26 .29 RPM
SRP040447_lung 21 .66 RPM
SRP040447_skeletal_muscle 19 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000018865 ortholog_one2one 2 retrogenes
retro_cfam_1937, retro_cfam_691,
Choloepus hoffmanni ENSCHOG00000010827 ortholog_one2one 2 retrogenes
retro_chof_1617, retro_chof_852,
Callithrix jacchus ENSCJAG00000008375 ortholog_one2many 1 retrogene
retro_cjac_2154,
Loxodonta africana ENSLAFG00000013664 ortholog_one2one 1 retrogene
retro_lafr_364,
Myotis lucifugus ENSMLUG00000000784 ortholog_one2one 1 retrogene
retro_mluc_1309,
Monodelphis domestica ENSMODG00000029494 ortholog_one2many 2 retrogenes
retro_mdom_1240, retro_mdom_573,
Otolemur garnettii ENSOGAG00000015151 ortholog_one2one 1 retrogene
retro_ogar_2604,
Rattus norvegicus ENSRNOG00000048608 ortholog_one2many 1 retrogene
retro_rnor_2771,
Sarcophilus harrisii ENSSHAG00000016705 ortholog_one2one 1 retrogene
retro_shar_836,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_276 65.31 50.89
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cpor_822 75.29 92.17
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_cpor_1262 68.32 71.75
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCPOG00000010630 retrocopies