Parental gene:

RSL1D1, ENSCAFG00000018865

Aliases:None
Description:ribosomal L1 domain containing 1 [Source:HGNC Symbol;Acc:24534]
Organism:Dog (Canis familiaris)
Coordinates:6:30982470..30994878(+)


>ENSCAFG00000018865
ATGGAGGGTTCAGCTCCGCCGTCACCGTCGTCCTCAACCGCAGCCTCGGCCTCCGCTCCAGAGACCCCGGCCTGCTTGGA
GCAGCTGGACAAAGGGCAGATTCGAAAAGCGGTGGAAGCACTGTTGGCACACTCCAGGTCCAGGAAGAACGCGAATGGCT
TGCTTTTGAATGAGAATGAGAATTTCTTTTTAATGGTGATATTATGGAAGATTCCAAGTAAAGAACTGAGGGTCAGACTG
GCCTTGCCTCATGGTATTCGATCAGATTTAACAGATATTTGTTTACTTACCAAGGATGAACCCAATTTAACTCCTGAAAA
CACAGAACGGTTTTACAAGAAGCTTTTGAACAAGCATGGAATTAAAACCATTTCTCAGATTATCCCCCTCCGAACTCTAA
AAAAGGAGTATAAAGCCTATGAAGCCAAGCTCCGCCTCTTGGGCAGTTTTGATTTCTTCCTTACTGATGCGAGAATCAGG
CGGCTCTTACCGTCACACCTCGGGAGACATTTCTACCACAGAAAGAAAGTTCCTGTACCTGTGAACCTTCTGGCCAAGAA
TTTATCCAGGGAGATTAATGAATGCATAGGTGGCACTGTCTTAAACATCTCTAAAAGTGGTTCTTGCAGTACCATCCGCG
TTGGCCACACTGGAATGGAGGTTGAACACATCGTTGATAACATCATCGCTGTTGCGAAGAGGCTTTCACAAAAGTTGCCA
GAGAAGTGGGAGAGTGTGAAACTCTTGTATGTGAAGACAGAGAGGTCAGCTTCCCTGCCCATCTTTTCCTCATTTGTCAG
CTGTCAGGATGAAGCCAAGGGAATATGCACTCGTATTCAGAGGAAAAAGGAAGCAAAGAAAAAACAGAAACAAAAAGAGA
ATCGTGAAAAACAAAAAGAGAAGAGAAAAAACAAAAGGCTTGAGAAACAGGGTAAAAAGGCTGCATCGGCCCCAAAGGAA
GAGGATGCGGACCCCAAAATTAGTGATGCTGTTGCGAAGGACCCTGCCCCACAGAAGGAGAAGATGCAAGCTCGTGAGAA
GAAAGAGGCCGGTAAAGGAAAAACCCAGCAGAAGGTGCAAGACGAGTCCGAAGACGAGATCCCACTCCTCGTACCAATAG
GGACTCCAGCAAAAGAAAACATAGAGGTGCAAAACCACGCTGCAGGAAAGAAGTCTCAAAAAAAGAGTCCTGGTCCCAAC
AGACCCCGTGGAAAAAAGAGAAAGGCCTGTCCAGGTTTGGAGACCCCGAAGGCTGCAGAGGCCAAGACTCCAGGTAACGG
CCCAGAGAAGAAGCCAAGAATCAAAGAAGAGGCAGAGAAAGAAAGAAACTCTTCACTGGGGAAAAAAGACCCAAGACAGA
AGACCAAAAAGCCAGGAGCCAGGTTCTTTACTACTGCTAATAAATCTGCAAAAAAAGCTCCCCACACCCCCAAACAGTGG
CCCAAAAAGCGCAAAGTACCCCAGTCAACCTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 36 .54 RPM
SRP017611_brain 28 .90 RPM
SRP017611_kidney 18 .23 RPM
SRP017611_liver 29 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010827 ortholog_one2one 2 retrogenes
retro_chof_1617, retro_chof_852,
Callithrix jacchus ENSCJAG00000008375 ortholog_one2many 1 retrogene
retro_cjac_2154,
Cavia porcellus ENSCPOG00000010630 ortholog_one2one 3 retrogenes
retro_cpor_1262, retro_cpor_276, retro_cpor_822,
Loxodonta africana ENSLAFG00000013664 ortholog_one2one 1 retrogene
retro_lafr_364,
Myotis lucifugus ENSMLUG00000000784 ortholog_one2one 1 retrogene
retro_mluc_1309,
Monodelphis domestica ENSMODG00000029494 ortholog_one2many 2 retrogenes
retro_mdom_1240, retro_mdom_573,
Otolemur garnettii ENSOGAG00000015151 ortholog_one2one 1 retrogene
retro_ogar_2604,
Rattus norvegicus ENSRNOG00000048608 ortholog_one2many 1 retrogene
retro_rnor_2771,
Sarcophilus harrisii ENSSHAG00000016705 ortholog_one2one 1 retrogene
retro_shar_836,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_691 83.69 57.35
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2. retro_cfam_1937 84.21 58.16
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Download FASTA sequences of all ENSCAFG00000018865 retrocopies