Parental gene:

THOC7, ENSCPOG00000007930

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_0:62187421..62206251(-)


>ENSCPOG00000007930
ATGGGAGCCGTGACTGACGACGAAGTCATAAGGAAACGTCTCCTTATTGATGGAGATGGTGCTGGAGATGACCGCAGGAT
TAATCTGCTAGTGAAAAGTTTCATTAAATGGTGCAACTCTGGATCCCAAGAAGAGGGATACAGCCAGTACCAACGAATGC
TGAGCACTCTGTCCCAATGTGAGTTTTCCATGGGCAAAACTTTGCTGGTGTATGATATGAATCTCAGGGAGATGGAAAAC
TATGAAAAAATTTACAAAGAAATAGAATGCAGCATTGCAGGAGCACATGAAAAGATTGCTGAGTGCAAAAAGCAAATTCT
TCAAGCAAAACGAATTAGAAAAAATCGCCAAGAATATGATGCTTTGGCAAAGGTGATCCAGCATCACCCAGACAGGCATG
AGACCTTAAAGGAACTAGAGGCTTTAGGGAAAGAGTTGGAGCATCTTTCACACATTAAAGAAAGCGTGGAAGACAAGCTG
GAATTGCGACGGAAACAGTTTCACGTTCTTCTTAGCACCATCCATGAACTCCAGCAGACTCTGGAAAATGATGAAAAGCT
CTCAGAAGTAGAAGAAACTCAAGAAACAAGCATAGAAACGGATCCTAAGCCA

Library Parental gene expression (RPM)
SRP017611_brain 11 .96 RPM
SRP017611_kidney 24 .08 RPM
SRP017611_liver 27 .20 RPM
SRP040447_lung 18 .84 RPM
SRP040447_skeletal_muscle 22 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012170 ortholog_one2one 2 retrogenes
retro_chof_2655, retro_chof_722,
Callithrix jacchus ENSCJAG00000034899 possible_ortholog 2 retrogenes
retro_cjac_354, retro_cjac_398,
Dasypus novemcinctus ENSDNOG00000005917 ortholog_one2one 5 retrogenes
retro_dnov_2083, retro_dnov_2129, retro_dnov_2335, retro_dnov_2374, retro_dnov_380,
Loxodonta africana ENSLAFG00000001987 ortholog_one2one 2 retrogenes
retro_lafr_585, retro_lafr_774,
Myotis lucifugus ENSMLUG00000012060 possible_ortholog 1 retrogene
retro_mluc_369,
Oryctolagus cuniculus ENSOCUG00000021860 possible_ortholog 1 retrogene
retro_ocun_124,
Otolemur garnettii ENSOGAG00000024865 ortholog_one2one 1 retrogene
retro_ogar_2733,
Sorex araneus ENSSARG00000013894 possible_ortholog 1 retrogene
retro_sara_41,
Sus scrofa ENSSSCG00000011491 ortholog_one2one 1 retrogene
retro_sscr_1182,
Tupaia belangeri ENSTBEG00000007069 possible_ortholog 1 retrogene
retro_tbel_49,
Tursiops truncatus ENSTTRG00000013618 ortholog_one2one 3 retrogenes
retro_ttru_1365, retro_ttru_23, retro_ttru_957,
Vicugna pacos ENSVPAG00000010083 ortholog_one2one 1 retrogene
retro_vpac_68,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1127 80.77 100.00
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2. retro_cpor_1164 57.14 50.49
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Download FASTA sequences of all ENSCPOG00000007930 retrocopies