Parental gene:

EI24, ENSCPOG00000007272

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_19:20613771..20621714(-)


>ENSCPOG00000007272
CTGGGTGGTGAAGAGATGGCCGACAGTGTCAAAACCTTTCTCCAGGACCTTGGCAGGGGAATCAAAGACTCCATCTGGGG
CATCTGTACCATCTCAAAGTTGGATGCTCGGATCCAGCAAAAGAGAGAGGAGCAGCGTCGAAGACGGGCAAGTAGTGCCC
TGGCTCAAAGGAGAACCCAGAGTATAGAGCGGAAGCAAGACAGTGAGTCACGTATCCTTAGTCGAATTTTCCAGTGCTGT
GCTTGGAATGGTGGAGTATTCTGGTTAAGTCTATTCTTGTTTTATCGAGTATTTATTCCTGTGCTTCAGTCAGTGACAGC
ACGGATTATTGGTGATCCATCCCTACATGGAGATATTTGGTCTTGGCTGGAATTCTTCATCACATCAGTTTTCAGTGCTC
TTTGGGTGCTCCCCTTGTTTGTGCTCAGCAAAATCGTGAATGCCATTTGGTTTCAAGATATAGCTGACCTGGCGTTTGAG
GTGTCAGGGAGAAAGCCTCAGCCATTCCCCAGTGTCAGCAAAATAATTGCTGACATGCTCTTCAACCTCCTGCTGCAGGC
TCTTTTCCTTATCCAGGGGATGTTTGTGAGTCTCTTTCCCATCCATCTGGTTGGTCAGCTGGTCAGTCTGTTGCATATGT
CCCTTCTGTACTCACTGTACTGCTTCGAGTATCGTTGGTTCAATAAAGGAATTGAAATGCATCAGCGGTTGTCAAACATA
GAAAGGAACTGGCCTTACTACTTTGGATTTGGTCTGCCCTTGGCTTTCCTCACAGCAATGCAGTCCTCGTATATTATCAG
TGGCTGCCTCTTCTCTATCCTTTTTCCTTTGTTCATCATCAGCGCCAATGAAGCAAAGACCCCTGGAAAAGCATACCTTT
TCCAGTTGCGCCTCTTCTCCTTGGTGGTCTTCTTAAGCAACAGACTCTTCCATAAGACAGTCTACCTGCAGTCGGCGATG
AGCAGCTCCACTTCTGCAGAGAAGCTCCCCTCACCGCATCCATCTCCTGCCAAAATGAAGGCCACTGCAGGCCAT

Library Parental gene expression (RPM)
SRP017611_brain 41 .41 RPM
SRP017611_kidney 46 .38 RPM
SRP017611_liver 47 .57 RPM
SRP040447_lung 37 .28 RPM
SRP040447_skeletal_muscle 43 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000990 ortholog_one2one 2 retrogenes
retro_amel_1449, retro_amel_1681,
Bos taurus ENSBTAG00000007202 ortholog_one2one 2 retrogenes
retro_btau_1242, retro_btau_443,
Canis familiaris ENSCAFG00000010898 ortholog_one2one 1 retrogene
retro_cfam_1829,
Choloepus hoffmanni ENSCHOG00000012669 ortholog_one2one 3 retrogenes
retro_chof_1433, retro_chof_1994, retro_chof_804,
Dasypus novemcinctus ENSDNOG00000002362 ortholog_one2one 4 retrogenes
retro_dnov_1083, retro_dnov_1421, retro_dnov_2143, retro_dnov_2345,
Equus caballus ENSECAG00000015861 ortholog_one2one 1 retrogene
retro_ecab_1022,
Erinaceus europaeus ENSEEUG00000003274 ortholog_one2one 1 retrogene
retro_eeur_435,
Felis catus ENSFCAG00000015100 ortholog_one2one 1 retrogene
retro_fcat_1754,
Homo sapiens ENSG00000149547 ortholog_one2one 3 retrogenes
retro_hsap_236, retro_hsap_2782, retro_hsap_3804,
Loxodonta africana ENSLAFG00000010888 ortholog_one2many 15 retrogenes
retro_lafr_262, retro_lafr_263, retro_lafr_264, retro_lafr_265, retro_lafr_394, retro_lafr_395, retro_lafr_396, retro_lafr_397, retro_lafr_398, retro_lafr_399, retro_lafr_566, retro_lafr_589, retro_lafr_626, retro_lafr_627, retro_lafr_999,
Microcebus murinus ENSMICG00000003023 ortholog_one2one 3 retrogenes
retro_mmur_398, retro_mmur_498, retro_mmur_632,
Myotis lucifugus ENSMLUG00000001583 ortholog_one2one 1 retrogene
retro_mluc_1249,
Macaca mulatta ENSMMUG00000010009 ortholog_one2one 3 retrogenes
retro_mmul_1443, retro_mmul_1653, retro_mmul_2244,
Nomascus leucogenys ENSNLEG00000007451 ortholog_one2one 3 retrogenes
retro_nleu_2149, retro_nleu_684, retro_nleu_853,
Oryctolagus cuniculus ENSOCUG00000014670 ortholog_one2one 1 retrogene
retro_ocun_1578,
Otolemur garnettii ENSOGAG00000001838 ortholog_one2one 6 retrogenes
retro_ogar_1055, retro_ogar_1379, retro_ogar_2700, retro_ogar_2701, retro_ogar_659, retro_ogar_799,
Ochotona princeps ENSOPRG00000013491 ortholog_one2one 2 retrogenes
retro_opri_106, retro_opri_1130,
Procavia capensis ENSPCAG00000012762 ortholog_one2one 1 retrogene
retro_pcap_452,
Pongo abelii ENSPPYG00000004033 ortholog_one2one 3 retrogenes
retro_pabe_2234, retro_pabe_3107, retro_pabe_416,
Pan troglodytes ENSPTRG00000004444 ortholog_one2one 4 retrogenes
retro_ptro_1202, retro_ptro_1883, retro_ptro_206, retro_ptro_2581,
Pteropus vampyrus ENSPVAG00000004532 ortholog_one2one 1 retrogene
retro_pvam_1124,
Rattus norvegicus ENSRNOG00000030391 ortholog_one2one 1 retrogene
retro_rnor_2605,
Sarcophilus harrisii ENSSHAG00000017333 ortholog_one2one 1 retrogene
retro_shar_433,
Ictidomys tridecemlineatus ENSSTOG00000004299 ortholog_one2one 2 retrogenes
retro_itri_1343, retro_itri_1373,
Tarsius syrichta ENSTSYG00000004747 ortholog_one2one 2 retrogenes
retro_tsyr_1238, retro_tsyr_1423,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_132 76.88 91.01
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2. retro_cpor_929 62.96 53.04
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Download FASTA sequences of all ENSCPOG00000007272 retrocopies