Parental gene:

SNX6, ENSCPOG00000006862

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_23:2068196..2114872(-)


>ENSCPOG00000006862
GCCTGCGCTGGCCCTAGAAGCGGAGCAGCCATGATGGAAGGCCTGGACGACGGCCCCGACTTCCTCTCGGAGGAAGACCG
TGGACTTAAAGCAATAAATGTAGATCTTCAAAGTGATGCTGCTCTGCAGGTGGACATTTCTGATGCTCTTAGTGAGCGGG
ATAAAGTAAAATTCACTGTCCATACAAAGAGTTCATTGCCCAATTTTAAACAAAATGAGTTTTCTGTTGTTCGACAACAT
GAGGAATTTATCTGGCTTCATGATTCCTTCGTTGAAAATGAAGACTATGCAGGTTATATCATCCCTCCAGCACCACCAAG
GCCTGATTTTGATGCTTCAAGAGAAAAGCTGCAGAAGCTTGGAGAAGGGGAAGGGTCAATGACAAAGGAAGAATTCACAA
AGATGAAACAGGAACTGGAAGCTGAATATTTGGCAATATTCAAGAAGACAGTGGCAATGCATGAAGTGTTCCTGTGTCGT
GTGGCAGCTCATCCTATTTTGAGGAAAGATTTAAATTTCCATGTCTTCTTGGAGTATAATCAAGATTTGAGTGTTCGAGG
AAAAAATAAAAAAGAGAAACTTGAAGATTTCTTTAAAAACATGGTCAAATCAGCAGATGGAGTCATTGTTTCAGGTGTAA
AGGATGTAGATGATTTCTTTGAGCATGAACGAACATTCCTTCTAGAATATCATAACCGGGTTAAGGATGCATCTGCTAAA
TCTGATAGGATGACAAGATCTCACAAAAGTGCTGCAGATGATTACAATAGAATTGGTTCTTCGTTATATGCTTTAGGAAC
TCAGGATTCTACTGATATATGCAAGTTTTTCCTCAAAGTTTCAGAACTGTTTGATAAAACAAGAAAAATAGAAGCACGAG
TATCTGCTGATGAAGACCTCAAACTTTCTGACCTTTTAAAATATTACTTAAGAGAATCTCAAGCAGCTAAGGATCTCCTC
TACCGAAGATCTCGATCATTAGTGGATTATGAAAATGCTAATAAAGCACTGGATAAAGCAAGGGCAAAAAATAAAGACGT
TCTGCAGGCTGAAACTTCCCAACAACTGTGTTGTCAGAAGTTTGAAAAAATATCTGAATCTGCAAAACAAGAACTTATAG
ACTTTAAGACAAGAAGAGTTGCTGCATTCAGAAAAAATTTAGTGGAACTTGCAGAATTAGAACTGAAGCATGCCAAGGGT
AACCTCCAGCTGCTGCAGAACTGCCTGGCAGTGTTGAATGGAGACACA

Library Parental gene expression (RPM)
SRP017611_brain 19 .73 RPM
SRP017611_kidney 64 .17 RPM
SRP017611_liver 21 .81 RPM
SRP040447_lung 36 .85 RPM
SRP040447_skeletal_muscle 10 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012873 ortholog_one2one 1 retrogene
retro_btau_870,
Nomascus leucogenys ENSNLEG00000003310 ortholog_one2one 1 retrogene
retro_nleu_3063,
Pongo abelii ENSPPYG00000005736 ortholog_one2one 2 retrogenes
retro_pabe_1668, retro_pabe_1698,
Pan troglodytes ENSPTRG00000006253 ortholog_one2one 1 retrogene
retro_ptro_1362,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1145 78.77 50.72
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Download FASTA sequences of all ENSCPOG00000006862 retrocopies