Parental gene:

ENSCPOG00000006633

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_96:837016..849418(+)


>ENSCPOG00000006633
ATGGACAAAGCTAAAGAAAACCTCATTTCAGGGTCTATAAAGGCCACCGGTCCTCTTGGGAACGGTCCGAAACGTGTCCT
GGTGATGAAGCAGCCTCCCTCTCAGAACCCATCGTCCGAAAGCAGCGGCGGTGGCCAGGCTCAGCGGGTCTTGTGTCCTT
CAAATTCCTCCCAGCGGGTTCCCACGCAAGCACAGAAGCTCATCTGTAGCCAGAAGGTGGTACAGAAGCAACTGCAGGCC
ACCGGCGGGGCCCATCCTGTCCCCCGGCCAGAGAACAGCACCCAGAAGAGCGAGCAGTCCCAGCCGGCAGCATCCGGAGG
GAACCCTGGGAAGGAAGTGGAATCAAAACCAAAAAATGAAGACTCGAAAAGGAGACAGTGGACTTTGGAAGATTTTGATA
TTGGCCGCCCGCTAGGTAAAGGAAAGTTTGGCAATGTTTATTTGGCCAGAGAAAAACAAAGCAAGTTTATCCTGGCTCTG
AAGGTGTTATTTAAAGCCCAGCTGGAGAAAGCAGGCGTGGAGCACCAGCTCAGGAGAGAAGTGGAGATACAGTCCCACCT
CCGGCATCCCAACATCCTCAGGCTGTACGGTTACTTCCACGACGCCACGAGAGTTTACCTAATTCTGGAGTATGCCCCGC
TTGGAACAGTCTATAGAGAACTTCAGAAACTCTCCAAGTTTGATGAGCAGAGAACTGCTACTTATATCACGGAATTGGCA
AATGCCCTGTCTTACTGTCATTCCAAGAGAGTTATTCATAGGGATATTAAACCAGAGAACCTGCTGCTGGGGTCAGCTGG
AGAGCTGAAGATCGCAGATTTCGGGTGGTCAGTGCATGCTCCGTCCTCCAGGAGGACCACTCTGTGCGGCACCCTGGACT
ACCTGCCCCCCGAGATGATCGAAGGCCGGATGCATGATGAGAAGGTGGATCTCTGGAGCCTGGGTGTCCTCTGCTACGAG
TTTCTGGTCGGGAAGCCACCTTTTGAGGCGCACACGCACCAGGAGACCTACAAAAGGATCTCACGGGTCGAATTCACGTT
CCCTGACTTTGTGACAGAGGGAGCCCGGGACTTCATTTCAAGGCTGTTAAAGCATAATCCAAGCCAGAGGCCGACTCTTA
GTGAAGTCCTCGAACACCCCTGGGTCACAACAAATTCAACCAAGCCATCAAGTTGCCAGAAAAGCAAAGAACCAGCTAGC
AAATCATCTTAG

Library Parental gene expression (RPM)
SRP017611_brain 1 .38 RPM
SRP017611_kidney 0 .84 RPM
SRP017611_liver 0 .65 RPM
SRP040447_lung 3 .10 RPM
SRP040447_skeletal_muscle 0 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000029331 ortholog_one2many 3 retrogenes
retro_cfam_1027, retro_cfam_257, retro_cfam_764,
Choloepus hoffmanni ENSCHOG00000005976 ortholog_one2many 8 retrogenes
retro_chof_1302, retro_chof_1575, retro_chof_1709, retro_chof_2213, retro_chof_2389, retro_chof_259, retro_chof_565, retro_chof_764,
Felis catus ENSFCAG00000024493 ortholog_one2many 1 retrogene
retro_fcat_495,
Homo sapiens ENSG00000087586 ortholog_one2many 1 retrogene
retro_hsap_510,
Gorilla gorilla ENSGGOG00000007197 ortholog_one2many 1 retrogene
retro_ggor_470,
Myotis lucifugus ENSMLUG00000007925 ortholog_one2many 1 retrogene
retro_mluc_1931,
Macaca mulatta ENSMMUG00000000070 ortholog_one2many 1 retrogene
retro_mmul_431,
Mus musculus ENSMUSG00000027496 ortholog_one2many 1 retrogene
retro_mmus_2825,
Nomascus leucogenys ENSNLEG00000007029 ortholog_one2many 1 retrogene
retro_nleu_1553,
Otolemur garnettii ENSOGAG00000004441 ortholog_many2many 3 retrogenes
retro_ogar_2805, retro_ogar_3440, retro_ogar_980,
Pongo abelii ENSPPYG00000011148 ortholog_one2many 1 retrogene
retro_pabe_231,
Pan troglodytes ENSPTRG00000013646 ortholog_one2many 1 retrogene
retro_ptro_381,
Rattus norvegicus ENSRNOG00000004479 ortholog_one2many 2 retrogenes
retro_rnor_664, retro_rnor_670,
Sus scrofa ENSSSCG00000007493 ortholog_many2many 1 retrogene
retro_sscr_936,
Ictidomys tridecemlineatus ENSSTOG00000011958 ortholog_one2many 2 retrogenes
retro_itri_366, retro_itri_772,
Tupaia belangeri ENSTBEG00000013284 ortholog_one2many 2 retrogenes
retro_tbel_1137, retro_tbel_2604,
Tarsius syrichta ENSTSYG00000009221 ortholog_one2many 1 retrogene
retro_tsyr_378,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_106 90.82 100.00
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Download FASTA sequences of all ENSCPOG00000006633 retrocopies