RetrogeneDB - Parental gene ENSCPOG00000002615 details

                            
>ENSCPOG00000002615
ATGTCCATAAGGGTGACCCAGAAGTCCTACAAGGTGTCCACCTCTGGCCCCCGGGCCTTCAGCAGCCGCTCCTACACCAG

CGGGCCCGGCTCCCGCATCAGCTCCTCCGGCTTCTCCCGAGTGGGCAGCAGCAGCAGTTTCCGGGGCGGCGTGGGGCTGG

GTGGCTATGGCGGGGCCGGTGGTGTGGGTGGCATCACAGCCGTCCAGGTGAACCAGAGCCTGCTGAACCCCCTGAATCTG

GAGGTGGACCCCAACATCCAGGCTGTGCGCATTCAGGAGAAGGAGCAGATCAAGAACCTCAACAATAAGTTCGCCTCCTT

CATCGACAAGGTGCGGTTTCTGGAGCAGCAGAATAAGATGCTAGAGACCAAATGGAGTCTCCTGCAACAGCAGAAGACGT

CCCGGAGCAACATGGACAACATGTTCGAAAGCTACATCAACAACCTCCGGAGGCAGCTGGACACACTGGGTCAGGAGAAG

CTTAAGCTGGAGGCGGAGCTTGGCAACATGCAGGGGATGGTGGAGGACTTCAAGAATAAGTATGAAGATGAGATCAACAA

GCGTACAGAGATGGAGAATGAATTTGTCCTCATCAAGAAGGATGTGGATGAAGCTTACATGAACAAGGTGGAGCTTGAGT

CTCGCCTGGAAGGACTGACTGACGAGATCAACTTCCTCAGGCAGCTGTATGAAGAGGAGATACGTGAGCTGCAGTCGCAG

ATCTCAGATACATCTGTGGTGCTGTCCATGGACAACAGCCGCTCCCTGGACCTGGATGGTATCATCGCTGAGGTCAAGGC

CCAGTACGAGGAGATTGCCAACCGCAGCCGGGCCGAGGCTGAGAGCATGTACCAGATCAAGTATGAAGAGCTGCAGACTC

TGGCTGGGAAGCACGGGGATGACCTCCGCCGCACAAAGTCTGAGATCTCTGAGATGAACCGCAGCATCAGCCGCCTCCAG

GCAGAGATTGAAGCTCTCAAAGGCCAGAGAGCAGCCCTGGAAGCTGCCATCGCTGATGCTGAGCAGCGTGGGGAGATGGC

CATTAAGGATGCCAATGCCAAGCTGGCCCAGCTGGAGAGCGCCCTGCAGAAGGCCAAGCAGGACATGGCTCGGCAGCTGC

GTGAGTACCAGGAGCTCATGAATGTCAAGCTGGCGTTGGACATCGAGATTGCCACTTACCGCAAGCTGCTGGAGGGCGAG

GAGAATAGGCTGGAGGCTGGGATGCAGAACCTGAGTATCCACACGAAGACCACCAGTGGCTATGCAGGAGTGGTGAGCTC

ACCCTATGGGGGCCTCACAAGCCCTGGCTTTGGCAGCCTCACAAGCCCTGGCTTCACCCGCACCAAGTCTGCTGTGGTTG

TGAAGAAGATCGAGACCCGTGATGGGAAGCTGGTGTCTGAGACCTCCGATGTCCTGCCCAAGTGA

Library	Parental gene expression (RPM)
SRP017611_brain	4 .37 RPM
SRP017611_kidney	147 .71 RPM
SRP017611_liver	168 .80 RPM
SRP040447_lung	155 .44 RPM
SRP040447_skeletal_muscle	1 .90 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Canis familiaris	ENSCAFG00000007199	ortholog_many2many	2 retrogenes	retro_cfam_1036, retro_cfam_1590,
Callithrix jacchus	ENSCJAG00000018147	ortholog_many2many	3 retrogenes	retro_cjac_124, retro_cjac_167, retro_cjac_216,
Dasypus novemcinctus	ENSDNOG00000007400	ortholog_one2many	3 retrogenes	retro_dnov_1267, retro_dnov_1886, retro_dnov_2358,
Felis catus	ENSFCAG00000000298	ortholog_many2many	2 retrogenes	retro_fcat_1142, retro_fcat_891,
Homo sapiens	ENSG00000170421	ortholog_one2many	28 retrogenes	retro_hsap_1012, retro_hsap_1024, retro_hsap_1324, retro_hsap_1513, retro_hsap_1557, retro_hsap_1599, retro_hsap_169, retro_hsap_1708, retro_hsap_235, retro_hsap_2354, retro_hsap_2669, retro_hsap_2731, retro_hsap_2768, retro_hsap_2797, retro_hsap_2842, retro_hsap_3069, retro_hsap_3359, retro_hsap_3379, retro_hsap_3433, retro_hsap_371, retro_hsap_3963, retro_hsap_4203, retro_hsap_4688, retro_hsap_4691, retro_hsap_4775, retro_hsap_644, retro_hsap_844, retro_hsap_932,
Gorilla gorilla	ENSGGOG00000014673	ortholog_many2many	18 retrogenes	retro_ggor_1160, retro_ggor_1787, retro_ggor_1862, retro_ggor_1897, retro_ggor_1900, retro_ggor_2320, retro_ggor_2662, retro_ggor_2913, retro_ggor_2918, retro_ggor_297, retro_ggor_2975, retro_ggor_382, retro_ggor_564, retro_ggor_66, retro_ggor_691, retro_ggor_751, retro_ggor_803, retro_ggor_809,
Macaca mulatta	ENSMMUG00000002163	ortholog_many2many	22 retrogenes	retro_mmul_1069, retro_mmul_1122, retro_mmul_1178, retro_mmul_1349, retro_mmul_1351, retro_mmul_1412, retro_mmul_1697, retro_mmul_1753, retro_mmul_1810, retro_mmul_1855, retro_mmul_1866, retro_mmul_2097, retro_mmul_2137, retro_mmul_2357, retro_mmul_2431, retro_mmul_2546, retro_mmul_289, retro_mmul_488, retro_mmul_58, retro_mmul_766, retro_mmul_816, retro_mmul_886,
Mustela putorius furo	ENSMPUG00000006441	ortholog_many2many	7 retrogenes	retro_mputfur_1101, retro_mputfur_1208, retro_mputfur_1271, retro_mputfur_1557, retro_mputfur_1587, retro_mputfur_556, retro_mputfur_895,
Mus musculus	ENSMUSG00000049382	ortholog_one2many	1 retrogene	retro_mmus_2905,
Nomascus leucogenys	ENSNLEG00000017733	ortholog_one2many	8 retrogenes	retro_nleu_1913, retro_nleu_225, retro_nleu_2285, retro_nleu_2421, retro_nleu_2485, retro_nleu_2727, retro_nleu_2787, retro_nleu_672,
Oryctolagus cuniculus	ENSOCUG00000006945	ortholog_one2many	1 retrogene	retro_ocun_313,
Otolemur garnettii	ENSOGAG00000011740	ortholog_many2many	16 retrogenes	retro_ogar_1076, retro_ogar_1162, retro_ogar_1256, retro_ogar_1572, retro_ogar_1874, retro_ogar_1898, retro_ogar_1952, retro_ogar_2004, retro_ogar_2149, retro_ogar_2177, retro_ogar_2261, retro_ogar_2500, retro_ogar_3198, retro_ogar_3318, retro_ogar_339, retro_ogar_664,
Pongo abelii	ENSPPYG00000004562	ortholog_many2many	31 retrogenes	retro_pabe_1102, retro_pabe_1261, retro_pabe_1289, retro_pabe_1460, retro_pabe_1743, retro_pabe_2063, retro_pabe_2077, retro_pabe_2129, retro_pabe_2142, retro_pabe_2214, retro_pabe_2270, retro_pabe_2352, retro_pabe_2544, retro_pabe_2741, retro_pabe_2763, retro_pabe_2787, retro_pabe_2842, retro_pabe_2926, retro_pabe_2943, retro_pabe_3138, retro_pabe_332, retro_pabe_3439, retro_pabe_3644, retro_pabe_3716, retro_pabe_417, retro_pabe_460, retro_pabe_569, retro_pabe_605, retro_pabe_701, retro_pabe_803, retro_pabe_851,
Pteropus vampyrus	ENSPVAG00000009360	ortholog_one2many	3 retrogenes	retro_pvam_1299, retro_pvam_1396, retro_pvam_45,
Rattus norvegicus	ENSRNOG00000009779	ortholog_one2many	1 retrogene	retro_rnor_807,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cpor_233	56.48	61.60	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cpor_302	98.17	92.19	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cpor_516	91.39	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cpor_1269	55.29	69.20	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cpor_1459	53.04	51.05	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCPOG00000002615 retrocopies

Parental gene:	ENSCPOG00000002615
Aliases:	None
Description:	None
Organism:	*Guinea Pig (Cavia porcellus)*
Coordinates:	scaffold_9:46899999..46907434(+)

Parental gene:

ENSCPOG00000002615