Parental gene:

RPL15, ENSCPOG00000002253

Aliases:None
Description:Ribosomal protein L15 [Source:UniProtKB/TrEMBL;Acc:H0UY44]
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_0:72906045..72907884(-)


>ENSCPOG00000002253
ATGGGTGCGTACAAGTACATCCAAGAGCTCTGGAGGAAGAAGCAGTCCGATGTGATGCGGTTTCTTCTGAGGGTCCGCTG
CTGGCAGTACCGCCAGCTCTCTGCGCTCCACAGGGCTCCCCGCCCCACCCGGCCGGATAAAGCTCGCAGGCTGGGATACA
AGGCCAAACAAGGTTATGTCATATACAGGATTCGTGTGCGCCGGGGTGGTCGCAAACGTCCAGTTCCTAAGGGAGCAACT
TATGGCAAGCCTGTCCATCATGGTGTTAACCAGCTAAAGTTCGCACGCAGCCTTCAGTCTGTTGCTGAGGAGCGAGCTGG
ACGCCACTGTGGGGCTTTAAGAGTTCTCAATTCCTATTGGGTTGGTGAAGATTCCACATACAAATTCTTTGAGGTTATCC
TCATTGATCCGTTCCACAAAGCCATTAGAAGAAATCCTGATACCCAGTGGATCACCAAACCAGTCCATAAGCACAGGGAG
ATGCGTGGGCTGACATCTGCAGGTCGCAAGAGTCGTGGCCTTGGAAAGGGCCACAAGTTCCACCACACTATTGGTGGTTC
TCGCCGTGCGGCTTGGAGAAGGCGCAATACTCTTCAGCTCCACCGTTACCGCTAA

Library Parental gene expression (RPM)
SRP017611_brain 106 .98 RPM
SRP017611_kidney 145 .52 RPM
SRP017611_liver 90 .88 RPM
SRP040447_lung 229 .18 RPM
SRP040447_skeletal_muscle 285 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000033080 possible_ortholog 2 retrogenes
retro_btau_152, retro_btau_201,
Canis familiaris ENSCAFG00000005764 possible_ortholog 5 retrogenes
retro_cfam_1003, retro_cfam_1159, retro_cfam_1630, retro_cfam_572, retro_cfam_656,
Felis catus ENSFCAG00000026237 ortholog_one2one 6 retrogenes
retro_fcat_1820, retro_fcat_285, retro_fcat_306, retro_fcat_610, retro_fcat_930, retro_fcat_985,
Homo sapiens ENSG00000174748 possible_ortholog 14 retrogenes
retro_hsap_1294, retro_hsap_1804, retro_hsap_2160, retro_hsap_2870, retro_hsap_2927, retro_hsap_3095, retro_hsap_3422, retro_hsap_3661, retro_hsap_3792, retro_hsap_592, retro_hsap_631, retro_hsap_791, retro_hsap_930, retro_hsap_957,
Gorilla gorilla ENSGGOG00000024274 ortholog_one2one 13 retrogenes
retro_ggor_1327, retro_ggor_1611, retro_ggor_1716, retro_ggor_1989, retro_ggor_2029, retro_ggor_2125, retro_ggor_2314, retro_ggor_2473, retro_ggor_39, retro_ggor_524, retro_ggor_552, retro_ggor_654, retro_ggor_771,
Loxodonta africana ENSLAFG00000004155 possible_ortholog 1 retrogene
retro_lafr_677,
Macropus eugenii ENSMEUG00000014522 ortholog_one2one 3 retrogenes
retro_meug_1678, retro_meug_2006, retro_meug_2112,
Myotis lucifugus ENSMLUG00000013809 ortholog_one2one 15 retrogenes
retro_mluc_1357, retro_mluc_1709, retro_mluc_1720, retro_mluc_2052, retro_mluc_2142, retro_mluc_2454, retro_mluc_425, retro_mluc_623, retro_mluc_701, retro_mluc_714, retro_mluc_748, retro_mluc_749, retro_mluc_907, retro_mluc_943, retro_mluc_99,
Macaca mulatta ENSMMUG00000006353 possible_ortholog 1 retrogene
retro_mmul_209,
Monodelphis domestica ENSMODG00000014880 possible_ortholog 3 retrogenes
retro_mdom_1315, retro_mdom_1803, retro_mdom_918,
Mustela putorius furo ENSMPUG00000012148 possible_ortholog 7 retrogenes
retro_mputfur_1011, retro_mputfur_1252, retro_mputfur_1291, retro_mputfur_314, retro_mputfur_346, retro_mputfur_658, retro_mputfur_669,
Mus musculus ENSMUSG00000012405 possible_ortholog 2 retrogenes
retro_mmus_118, retro_mmus_8,
Nomascus leucogenys ENSNLEG00000003580 possible_ortholog 1 retrogene
retro_nleu_80,
Oryctolagus cuniculus ENSOCUG00000010961 ortholog_one2one 2 retrogenes
retro_ocun_215, retro_ocun_228,
Otolemur garnettii ENSOGAG00000013056 possible_ortholog 13 retrogenes
retro_ogar_1066, retro_ogar_1129, retro_ogar_1182, retro_ogar_1453, retro_ogar_1483, retro_ogar_1629, retro_ogar_1809, retro_ogar_2378, retro_ogar_270, retro_ogar_3058, retro_ogar_3096, retro_ogar_3349, retro_ogar_903,
Procavia capensis ENSPCAG00000011995 possible_ortholog 1 retrogene
retro_pcap_265,
Rattus norvegicus ENSRNOG00000008140 possible_ortholog 17 retrogenes
retro_rnor_1046, retro_rnor_1409, retro_rnor_1497, retro_rnor_1685, retro_rnor_1690, retro_rnor_1785, retro_rnor_2042, retro_rnor_2249, retro_rnor_2313, retro_rnor_2451, retro_rnor_2473, retro_rnor_2786, retro_rnor_2997, retro_rnor_428, retro_rnor_66, retro_rnor_710, retro_rnor_844,
Sus scrofa ENSSSCG00000028079 possible_ortholog 5 retrogenes
retro_sscr_1219, retro_sscr_1225, retro_sscr_448, retro_sscr_968, retro_sscr_997,
Ictidomys tridecemlineatus ENSSTOG00000011153 possible_ortholog 4 retrogenes
retro_itri_1445, retro_itri_1838, retro_itri_479, retro_itri_785,
Tursiops truncatus ENSTTRG00000007244 ortholog_one2many 5 retrogenes
retro_ttru_1305, retro_ttru_1358, retro_ttru_280, retro_ttru_920, retro_ttru_987,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_620 72.97 72.55
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2. retro_cpor_807 67.30 76.47
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3. retro_cpor_900 57.38 59.31
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4. retro_cpor_978 54.44 79.90
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Download FASTA sequences of all ENSCPOG00000002253 retrocopies