Parental gene:

TMEM248, ENSCPOG00000000830

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_66:3750414..3761685(+)


>ENSCPOG00000000830
ATGTTTAGCATCAACCCCCTGGAGAACCTGAAGCTGTATATCAGCAGCCGGCCGCCTCTGGTGGTCTTTATGATCAGCGT
CAGCGCCATGGCCATAGCCTTCCTGACCCTGGGCTACTTCTTCAAGATCAAGGAGATTAAGTCACCGGAAATGACAGAGG
ATTGGAATACTTTTCTGCTGCGGTTTAATGACTTGGACTTGTGTGTATCGGAAAATGAAACATTAAAGCATCTCTCAAAC
GACAGCACAGCCTCGGAGAGCACAGTGACCAGCGGGCAGGCCAGAGTGTCCACCCAGTCCCCACAGGCCCTGGAGGACTC
GGGCCCAGTTAACATCTCAGTTGCAATCACCTTGACCCTGGACCCCCTCAAGCCCTTTGGAGGCTTCTCCCGCAATGTCA
CCCATCTGTATTCGACCATTTTGGGACATCAGATTGGACTTTCAGGCAGGGAAGCCCACGAGGAAATAAACATTACCTTT
ACCCTGCCCACGGCTTGGAGCTCGGACGACTGTGCTCTTCATGGCCATTGTGAGCAGGTGGTGTTCACAACCTGCATGAC
GCTCACGGCCTCCCCTGATGTCTTCCCTGTCACTGTACAGCCTCCACACTGCGTCCCTGACACGTACAGCAATGCCACGC
TGTGGTACAAGATCTTCACGACGGCCCGTGATGCCAACACGAAATACGCGCAGGACTACAATCCTTTCTGGTGTTACAAG
GGGGCCATTGGAAAAGTCTATCATGCTTTAAATCCCAAGCTTACCGTTATTGTTCCAGATGATGACCGTTCATTAATAAA
TTTGCACCTCATGCACACCAGTTACTTCCTCTTTGTGATGGTGATAACAATGTTTTGCTATGCTGTGATCAAAGGCAGAC
CCAGCAAACTGCGTCAGAGCAACCCTGAATTTTGCCCTGAGAAGGTGGCTTTGGCTGATGCCTAA

Library Parental gene expression (RPM)
SRP017611_brain 22 .55 RPM
SRP017611_kidney 40 .83 RPM
SRP017611_liver 24 .64 RPM
SRP040447_lung 49 .13 RPM
SRP040447_skeletal_muscle 31 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000004278 ortholog_one2one 1 retrogene
retro_cjac_2145,
Echinops telfairi ENSETEG00000015971 ortholog_one2one 1 retrogene
retro_etel_2097,
Homo sapiens ENSG00000106609 ortholog_one2one 1 retrogene
retro_hsap_3093,
Gorilla gorilla ENSGGOG00000022776 ortholog_one2one 1 retrogene
retro_ggor_2124,
Myotis lucifugus ENSMLUG00000000616 ortholog_one2one 1 retrogene
retro_mluc_1974,
Macaca mulatta ENSMMUG00000015843 ortholog_one2one 1 retrogene
retro_mmul_1973,
Nomascus leucogenys ENSNLEG00000013326 ortholog_one2one 1 retrogene
retro_nleu_2235,
Pan troglodytes ENSPTRG00000019253 ortholog_one2one 1 retrogene
retro_ptro_2089,
Pteropus vampyrus ENSPVAG00000002978 ortholog_one2one 2 retrogenes
retro_pvam_988, retro_pvam_997,
Sorex araneus ENSSARG00000001884 ortholog_one2one 1 retrogene
retro_sara_563,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_330 62.04 67.20
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Download FASTA sequences of all ENSCPOG00000000830 retrocopies