Parental gene:

STRAP, ENSCJAG00000021593

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:5564005..5585765(-)


>ENSCJAG00000021593
ATGGCAATGAGACAGACGCCGCTCACCTGCTCTGGCCACACGCGGCCCGTAGTTGATTTGGCCTTCAGTGGCATCACGCC
TTATGGGTATTTCTTAATCAGCGCTTGCAAAGGAGCTGGACAGCACTTGCCTGCACTCTCGGGACAACGTTATGGTAAAC
CTATGCTACGCCAGGGAGATACAGGAGACTGGATTGGAACGTTTTTGGGTCATAAAGGTGCTGTTTGGGGTGCAACACTG
AATAAGGATGCCAGCAAAGCAGCTACAGCAGCTGCGGATTTCACAGCCAAAGTGTGGGATGCAGTCTCAGGAGATGAATT
GATGACCCTGGCCCATAAACACATTGTCAAGACTGTGGATTTCACACAGGATAGTAATTATTTGTTAACCGGGGGACAGG
ATAAACTGTTACGCATCTATGACTTGAACAAACCTGAAGCAGAACCTAAGGAAATTAGTGGTCACACCTCTGGTATAAAA
AAAGCTCTGTGGTGCAGTGAAGATAAACAGATTCTTTCTGCTGATGACAAAACTGTTCGACTTTGGGATCATGCTACTAT
GACAGAAGTGAAATCTCTAAATTTTAATATGTCTGTTAGCAGTATGGAGTATATTCCCGAGGGAGAGATTTTGGTTATAA
CTTATGGACGATCTATTGCTTTTCATAGTGCAGTAAGTTTGGACCCAATTAAATCCTTTGAAGCTCCTGCAACCATCAAT
TCTGCCTCTCTTCATCCTGAGAAAGAATTTCTTGTTGCAGGTGGTGAAGATTTTAAACTTTATAAGTATGATTATAATAG
TGGAGAAGAATTAGAATCCTACAAGGGACACTTCGGTCCTATTCACTGTGTGAGATTTAGTCCTGATGGAGAACTCTATG
CCAGTGGTTCTGAAGATGGAACATTGAGACTATGGCAAACTGTGGTAGGAAAAACATATGGCCTTTGGAAATGTGTGCTT
CCTGAAGAAGATAGTGCTGAACTGGCAAAGCCAAAGCTTGGTTTTCCAGAGACAACAGAAGAGGAGCTAGAAGAAATGAC
ATCAGAGAATTCAGATTGCATCTATTCTTCAACTCCTGATGTTAAGGCCTGA

Library Parental gene expression (RPM)
SRP051959_colon 17 .71 RPM
SRP051959_heart 16 .17 RPM
SRP051959_kidney 20 .83 RPM
SRP051959_liver 27 .94 RPM
SRP051959_lung 17 .37 RPM
SRP051959_lymph_node 14 .09 RPM
SRP051959_skeletal_muscle 23 .93 RPM
SRP051959_spleen 17 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007422 ortholog_one2one 2 retrogenes
retro_chof_1098, retro_chof_1620,
Callithrix jacchus ENSCJAG00000006810 within_species_paralog 1 retrogene
retro_cjac_3104,
Homo sapiens ENSG00000023734 ortholog_one2one 2 retrogenes
retro_hsap_2092, retro_hsap_3723,
Gorilla gorilla ENSGGOG00000009939 ortholog_one2one 1 retrogene
retro_ggor_1633,
Macaca mulatta ENSMMUG00000013307 ortholog_one2one 2 retrogenes
retro_mmul_1695, retro_mmul_985,
Mus musculus ENSMUSG00000030224 ortholog_one2one 1 retrogene
retro_mmus_794,
Nomascus leucogenys ENSNLEG00000004160 ortholog_one2one 2 retrogenes
retro_nleu_1301, retro_nleu_1970,
Ochotona princeps ENSOPRG00000015211 ortholog_one2one 3 retrogenes
retro_opri_1029, retro_opri_217, retro_opri_541,
Pongo abelii ENSPPYG00000004334 ortholog_one2one 3 retrogenes
retro_pabe_2005, retro_pabe_3134, retro_pabe_3212,
Pan troglodytes ENSPTRG00000004734 ortholog_one2one 2 retrogenes
retro_ptro_1538, retro_ptro_2616,
Tursiops truncatus ENSTTRG00000003466 ortholog_one2one 2 retrogenes
retro_ttru_581, retro_ttru_974,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2503 91.48 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCJAG00000021593 retrocopies