Parental gene:

RBM22, ENSCJAG00000020963

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:48178987..48188353(-)


>ENSCJAG00000020963
ATGGCGACCTCTCTGGGTTCCAACACCTACAACAGGCAGAACTGGGAAGATGCGGACTTCCCCATTCTGTGCCAGACATG
TCTTGGAGAAAACCCATATATCCGAAAGACCAAAGAAAAGTATGGGAAGGAATGCAAAATCTGTGCCAGGCCGTTCACAG
TGTTTCGCTGGTGCCCCGGAGTCCGTATGCGTTTCAAGAAGACTGAGGTGTGCCAGACCTGCAGTAAATTGAAGAATGTC
TGTCAGACCTGCCTCTTAGACCTAGAGTATGCAGGCCTGCCCATCCAGGTTCGTGATGCAGGATTGTCTTTTAAAGATGA
CATGCCAAAGTCAGATGTCAACAAAGAGTACTATACACAGAATATGGAGAGAGAGATTTCTAACTCTGATGGAACACGGC
CAGTTGGCATGCTGGGGAAAGCCACATCTACCAGTGACATGCTGCTCAAACTGGCCCGGACCACACCCTACTACAAAAGG
AATCGACCCCACATTTGCTCCTTCTGGGTGAAAGGAGAGTGTAAAAGAGGAGAGGAATGTCCATACAGACATGAGAAGCC
TACAGATCCAGATGACCCCCTTGCTGATCAGAATATTAAAGATCGATACTACGGAATCAATGATCCTGTAGCTGACAAGC
TTCTAAAGCGGGCTTCAACAATGCCTCGGCTGGACCCACCGGAGGATAAAACTATCACCACACTATATGTTGGTGGTCTG
GGTGATACTATTACTGAGACAGATTTAAGAAATCATTTCTACCAGTTTGGAGAGATCCGGACGATCACTGTTGTGCAAAG
ACAGCAGTGTGCTTTCATCCAGTTTGCCACGAGGCAGGCTGCAGAAGTGGCTGCTGAGAAGTCCTTTAATAAGTTGATTG
TAAATGGCCGCAGACTGAATGTGAAATGGGGAAGATCCCAAGCAGCCAGAGGAAAAGAAAAAGAGAAAGATGGAACCACA
GACTCTGGGATCAAACTGGAACCAGTTCCAGGATTGCCAGGAGCTCTTCCTCCTCCTCCTGCAGCAGAAGAAGAAGCCTC
TGCCAACTACTTCAACTTGCCCCCAAGTGGTCCTCCAGCTGTGGTGAACATTGCCCTGCCACCACCCCCTGGTATCGCCC
CACCCCCCCCACCAGGTTTTGGGTCACACATGTTCCACCCAATGGGACCACCCCCTCCCTTCATGAGGGCTCCAGGACCA
ATCCACTATCCTTCTCAGGACCCTCAGCGGATGGGAGCTCATGCTGGAAAACACAGCAGTCCCTAG

Library Parental gene expression (RPM)
SRP051959_colon 5 .95 RPM
SRP051959_heart 5 .68 RPM
SRP051959_kidney 7 .10 RPM
SRP051959_liver 5 .33 RPM
SRP051959_lung 9 .08 RPM
SRP051959_lymph_node 11 .03 RPM
SRP051959_skeletal_muscle 8 .23 RPM
SRP051959_spleen 9 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000018082 ortholog_one2one 1 retrogene
retro_cfam_1480,
Cavia porcellus ENSCPOG00000001946 ortholog_one2one 2 retrogenes
retro_cpor_280, retro_cpor_283,
Dasypus novemcinctus ENSDNOG00000011166 ortholog_one2one 1 retrogene
retro_dnov_2298,
Homo sapiens ENSG00000086589 ortholog_one2one 2 retrogenes
retro_hsap_3465, retro_hsap_4273,
Gorilla gorilla ENSGGOG00000012947 ortholog_one2one 2 retrogenes
retro_ggor_2337, retro_ggor_2859,
Myotis lucifugus ENSMLUG00000009040 possible_ortholog 2 retrogenes
retro_mluc_1453, retro_mluc_153,
Macaca mulatta ENSMMUG00000020683 ortholog_one2one 4 retrogenes
retro_mmul_1199, retro_mmul_1348, retro_mmul_1553, retro_mmul_1762,
Monodelphis domestica ENSMODG00000009574 possible_ortholog 1 retrogene
retro_mdom_186,
Otolemur garnettii ENSOGAG00000011086 possible_ortholog 1 retrogene
retro_ogar_2206,
Pongo abelii ENSPPYG00000015955 ortholog_one2one 4 retrogenes
retro_pabe_1412, retro_pabe_1594, retro_pabe_2861, retro_pabe_3486,
Pan troglodytes ENSPTRG00000017423 ortholog_one2one 2 retrogenes
retro_ptro_2348, retro_ptro_2898,
Tarsius syrichta ENSTSYG00000003939 ortholog_one2one 3 retrogenes
retro_tsyr_1090, retro_tsyr_1187, retro_tsyr_1231,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_990 93.80 65.08
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2. retro_cjac_1338 97.63 100.00
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3. retro_cjac_2471 95.99 100.00
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4. retro_cjac_3342 68.90 70.07
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5. retro_cjac_3390 68.90 70.07
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6. retro_cjac_3934 70.13 70.07
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Download FASTA sequences of all ENSCJAG00000020963 retrocopies