Parental gene:

GDI2, ENSCJAG00000020512

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:4309042..4487050(-)


>ENSCJAG00000020512
ATGAATGAGGAGTACGACGTGATCGTGCTGGGCACCGGCCTGACGGAATGTATCCTGTCTGGTATAATGTCAGTGAATGG
CAAGAAAGTTCTTCATATGGATCAAAACCCTTACTATGGAGGAGAGAGTGCGTCTATAACACCACTGGAAGATTTATACA
AAAGATTTAAAATACCGGGATCACCACCAGAGTCAATGGGGAGAGGAAGAGACTGGAATGTTGACTTGATTCCCAAGTTC
CTTATGGCTAATGGTCAGCTGGTTAAGATGCTGCTTTATACAGAGGTAACTCGCTATCTGGATTTTAAAGTGACTGAAGG
AAGCTTTGTCTATAAGGGTGGAAAAATCTACAAGGTTCCTTCCACTGAAGCAGAAGCCCTGGCATCTAGTTTAATGGGAC
TGTTTGAAAAACGTCGCTTCAGGAAATTCCTTGTGTATGTTGCCAACTTCGATGAAAAAGATCCGAGAACTTTTGAAGGC
ATTGATCCTATGAAGACCACAATGCGAGAGGTGTATAAGAAATTTGATTTGGGCCAAGATGTTATAGATTTTACAGGTCA
TGCTCTTGCACTTTACAGAACTGATGACTACTTAGATCAACCATGTTGTGAAACCATTAATAGAATTAAACTTTATAGTG
AGTCTTTGGCAAGATATGGCAAAAGCCCGTACCTTTATCCGCTCTATGGCCTTGGAGAACTGCCCCAAGGATTTGCAAGG
CTAAGTGCTATTTATGGAGGTACCTATATGCTGAATAAACCCATTGAAGAAATCATTGTGCAGAATGGAAAAGTAATTGG
TGTAAAATCTGAAGGAGAAATTGCTCGCTGTAAGCAGCTCATCTGTGATCCCAGCTATGTAAAAGATCGGGTAGAAAAAG
TGGGCCAGGTGATCAGAGTTATTTGCATCCTCAGCCACCCCATCAAGAACACCAATGATGCCAACTCCTGCCAGATCATT
ATTCCACAGAACCAAGTCAATCGAAAGTCAGATATCTATGTCTGCATGATCTCCTCTGCGCACAATGTGGCGGCACAAGG
GAAGTATATCGCCATAGTTAGTACCACTGTGGAAACCAAGGAGCCTGAAAAGGAAATCAGACCAGCTTTGGAGCTCTTGG
AACCAATTGAACAGAAATTTATTAGCATCAGCGACCTCCTGGTACCAAAAGACTTGGGAACAGAAAGCCAGATCTTTATT
TCCCGCACATATGATGCTACCACTCATTTCGAGACAACATGTGATGACATTAAAAACATCTATAAGAGGATGACAGGATC
AGAGTTTGACTTTGAGGAAATGAAGCGCAAGAAAAACGACATCTATGGGGAAGACTAA

Library Parental gene expression (RPM)
SRP051959_colon 95 .32 RPM
SRP051959_heart 57 .76 RPM
SRP051959_kidney 82 .95 RPM
SRP051959_liver 111 .51 RPM
SRP051959_lung 71 .69 RPM
SRP051959_lymph_node 84 .91 RPM
SRP051959_skeletal_muscle 36 .51 RPM
SRP051959_spleen 105 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005316 ortholog_one2one 1 retrogene
retro_btau_1208,
Canis familiaris ENSCAFG00000005223 ortholog_one2one 2 retrogenes
retro_cfam_2196, retro_cfam_886,
Cavia porcellus ENSCPOG00000013449 ortholog_one2one 1 retrogene
retro_cpor_696,
Gorilla gorilla ENSGGOG00000003623 ortholog_one2one 1 retrogene
retro_ggor_2590,
Mus musculus ENSMUSG00000021218 ortholog_one2one 2 retrogenes
retro_mmus_2971, retro_mmus_360,
Oryctolagus cuniculus ENSOCUG00000005367 ortholog_one2many 1 retrogene
retro_ocun_69,
Ictidomys tridecemlineatus ENSSTOG00000006449 ortholog_one2one 1 retrogene
retro_itri_757,
Tupaia belangeri ENSTBEG00000011523 ortholog_one2one 1 retrogene
retro_tbel_644,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1168 83.22 100.00
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2. retro_cjac_3115 70.20 54.38
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Download FASTA sequences of all ENSCJAG00000020512 retrocopies