Parental gene:

SERBP1, ENSCJAG00000017440

Aliases:None
Description:SERPINE1 mRNA binding protein 1 [Source:HGNC Symbol;Acc:17860]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:103027321..103046006(-)


>ENSCJAG00000017440
ATGCCAGGGCACTTACAGGAAGGCTTCGGCTGCGTGGTCACCAACCGATTCGACCAGTTATTTGACGACGAATCGGACCC
TTTCGAGGTGTTAAAGGCAGCGGAGAACAAGAAAAAAGAAGCCGGCGGGGGCGGCGTTGGGGGCCCTGGGGCCAAGAGCG
CAGCTCAGGCCGCGGCGCAGACCAACTCCAACGCGGCAGGCAAGCAGCTGCGCAAGGAGTCCCAGAAAGACCGCAAGAAC
CCGCTGCCCCCCAGCGTTGGCGTGGTTGACAAGAAAGAGGAGACGCAGCCGCCCGTGGCGCTTAAGAAAGAAGGAATAAG
ACGAGTTGGAAGAAGACCTGATCAACAACTTCAGGGTGAAGGGAAAATAATTGATAGAAGACCAGAAAGGCGACCACCTC
GTGAACGAAGATTTGAAAAGCCACTTGAAGAAAAGGGTGAAGGGGGTGAATTTTCAGTTGATAGACCGATTATTGACCGA
CCTATTCGAGGTCGTGGTGGTCTTGGAAGAGGTCGAGGGGGCCGTGGACGTGGAATGGGCCGAGGAGATGGATTTGATTC
TCGTGGCAAACGTGAATTTGATAGGCATAGTGGAAGTGATAGATCTGGCCTGAAGCACGAGGACAAACGTGGAGGTAGCG
GATCTCACAACTGGGGAACTGTCAAAGACGAATTAACTGACTTGGAGCAATCAAATGTGACTGAGGAAACACCTGAAGGT
GAAGAACATCATCCAGTGGCAGACACTGAAAATAAGGAGAATGAAGTTGAAGAGGTAAAAGAGGAGGGTCCAAAAGAGAT
GACTTTGGATGAGTGGAAGGCTATTCAAAATAAGGACCGGGCAAAAGTAGAATTTAATATCCGAAAACCAAATGAAGGTG
CAGATGGGCAGTGGAAGAAGGGATTTGTTCTTCATAAATCAAAGAGTGAAGAGGCTCATGCTGAAGATTCGGTTATGGAC
CATCATTTCCGGAAGCCAGCAAATGATATAACGTCTCAGCTAGAGATCAATTTTGGAGACCTTGGCCGCCCAGGACGTGG
TGGCAGGGGAGGACGAGGTGGACGTGGGCGTGGTGGACGCCCAAACCGTGGCAGCAGGACCGACAAGTCAAGTGCTTCTG
CTCCTGATGTGGATGACCCAGAGGCATTCCCAGCTCTGGCTTAA

Library Parental gene expression (RPM)
SRP051959_colon 78 .88 RPM
SRP051959_heart 78 .25 RPM
SRP051959_kidney 75 .46 RPM
SRP051959_liver 100 .79 RPM
SRP051959_lung 87 .11 RPM
SRP051959_lymph_node 93 .65 RPM
SRP051959_skeletal_muscle 127 .23 RPM
SRP051959_spleen 82 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000018538 ortholog_one2one 1 retrogene
retro_cfam_546,
Homo sapiens ENSG00000142864 ortholog_one2one 3 retrogenes
retro_hsap_3056, retro_hsap_413, retro_hsap_4695,
Gorilla gorilla ENSGGOG00000010396 ortholog_one2one 1 retrogene
retro_ggor_408,
Myotis lucifugus ENSMLUG00000001424 ortholog_one2many 1 retrogene
retro_mluc_691,
Oryctolagus cuniculus ENSOCUG00000008946 possible_ortholog 1 retrogene
retro_ocun_1041,
Otolemur garnettii ENSOGAG00000025884 ortholog_one2one 1 retrogene
retro_ogar_185,
Pongo abelii ENSPPYG00000001256 possible_ortholog 1 retrogene
retro_pabe_3790,
Pan troglodytes ENSPTRG00000023560 ortholog_one2one 2 retrogenes
retro_ptro_1985, retro_ptro_317,
Sorex araneus ENSSARG00000000803 possible_ortholog 1 retrogene
retro_sara_135,
Tupaia belangeri ENSTBEG00000003689 ortholog_one2many 4 retrogenes
retro_tbel_1004, retro_tbel_1331, retro_tbel_2427, retro_tbel_532,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1207 79.16 96.90
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2. retro_cjac_3015 67.17 83.72
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Download FASTA sequences of all ENSCJAG00000017440 retrocopies