Parental gene:

SNW1, ENSCJAG00000016947

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:103113845..103157967(-)


>ENSCJAG00000016947
ATGGCGCTCACCAGCTTTTTACCTGCACCTACTCAGCTATCTCAGGACCAGCTAGAGGCTGAAGAAAAGGCAAGATCCCA
GAGATCACGGCAGACCTCATTGGTCTCCTCCCGAAGAGAGCCTCCCCCGTACGGATATCGGAAAGGCTGGATACCTCGGT
TATTAGAGGATTTTGGAGATGGAGGTGCTTTTCCAGAGATCCATGTGGCTCAGTATCCACTGGATATGGGACGAAAGAAA
AAAATGTCGAATGCACTGGCCATTCAGGTGGATTCTGAAGGAAAAATTAAATATGATGCAATCGCTCGACAAGGACAGTC
AAAAGACAAGGTCATTTACAGCAAATACACTGACCTGGTTCCAAAGGAGGTTATGAATGCAGATGACCCAGACCTGCAAA
GGCCCGATGAAGAAGCTATTAAAGAGATAACAGAAAAGACAAGAGTAGCCTTAGAAAAATCTGTATCACAGAAGGTTGCT
GCAGCCATGCCAGTTCGGGCAGCTGACAAACTGGCTCCTGCTCAGTATATCCGATACACACCATCTCAGCAAGGAGTGGC
TTTCAACTCTGGAGCTAAACAGAGGGTTATTCGGATGGTAGAAATGCAAAAAGATCCAATGGAGCCTCCAAGATTCTTCA
GGATTAATAAGAAAATTCCCCGGGGACCACCTTCTCCTCCTGCACCTGTCATGCATTCTCCTAGCCGAAAGATGACTGTA
AAGGAACAACAAGAGTGGAAGATTCCTCCTTGTATTTCTAACTGGAAAAATGCAAAGGGTTATACAATTCCATTAGACAA
ACGTCTGGCTGCTGATGGAAGAGGACTACAGACAGTACACATAAATGAAAATTTTGCCAAACTGGCCGAAGCCCTCTACA
TTGCTGATCGGAAGGCTCGTGAAGCTGTGGAAATGCGTGCCCAAGTAGAGAGAAAAATGGCTCAAAAAGAAAAGGAAAAA
CATGAAGAGAAACTTAGAGAAATGGCCCAGAAAGCCAGGGAGAGAAGAGCTGGGATCAAAACTCATGTGGAAAAAGAGGA
TGGGGAGGCACGTGAGAGGGATGAAATCCGGCATGACAGGCGAAAAGAGAGACAGCATGACCGGAATCTTTCCAGGGCAG
CTCCTGATAAGAGGTCAAAACTTCAGAGAAATGAAAATCGGGATATCAGTGAGGTCATTGCTCTCGGTGTTCCCAATCCT
CGGACTTCCAATGAAGTTCAGTACGACCAAAGGCTCTTCAACCAATCCAAGGGTATGGACAGTGGATTTGCAGGAGGAGA
AGATGAAATTTATAATGTTTATGATCAAGCCTGGAGAGGTGGTAAAGATATGGCCCAGAGTATTTATAGGCCCAGTAAAA
ATCTGGACAAGGACATGTATGGTGATGACCTAGAAGCCAGAATAAAGACCAACAGATTTGTTCCCGACAAGGAGTTTTCT
GGTTCAGACCGTAGGCAGAGAGGCCGAGAAGGACCAGTTCAATTTGAGGAAGATCCTTTTGGTTTGGACAAGTTTTTGGA
AGAAGCCAAACAGCATGGTGGCTCTAAAAGACCCTCAGATAGCAGCCGCCCCAAGGAACATGAGCATGAAGGCAAGAAGA
GGAGGAAGGAGTAG

Library Parental gene expression (RPM)
SRP051959_colon 26 .51 RPM
SRP051959_heart 32 .27 RPM
SRP051959_kidney 40 .80 RPM
SRP051959_liver 25 .21 RPM
SRP051959_lung 43 .68 RPM
SRP051959_lymph_node 38 .10 RPM
SRP051959_skeletal_muscle 34 .24 RPM
SRP051959_spleen 39 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003976 ortholog_one2one 2 retrogenes
retro_amel_163, retro_amel_912,
Canis familiaris ENSCAFG00000030409 ortholog_one2many 1 retrogene
retro_cfam_195,
Dipodomys ordii ENSDORG00000012380 ortholog_one2one 3 retrogenes
retro_dord_693, retro_dord_781, retro_dord_782,
Felis catus ENSFCAG00000001637 ortholog_one2one 1 retrogene
retro_fcat_635,
Loxodonta africana ENSLAFG00000003482 ortholog_one2one 2 retrogenes
retro_lafr_474, retro_lafr_787,
Myotis lucifugus ENSMLUG00000005228 ortholog_one2many 2 retrogenes
retro_mluc_387, retro_mluc_805,
Monodelphis domestica ENSMODG00000005252 ortholog_one2one 1 retrogene
retro_mdom_1841,
Mustela putorius furo ENSMPUG00000008724 ortholog_one2one 1 retrogene
retro_mputfur_551,
Mus musculus ENSMUSG00000021039 ortholog_one2one 2 retrogenes
retro_mmus_1022, retro_mmus_387,
Ochotona princeps ENSOPRG00000007568 ortholog_one2one 1 retrogene
retro_opri_737,
Pongo abelii ENSPPYG00000006031 ortholog_one2one 1 retrogene
retro_pabe_454,
Sorex araneus ENSSARG00000002279 ortholog_one2one 3 retrogenes
retro_sara_403, retro_sara_568, retro_sara_727,
Taeniopygia guttata ENSTGUG00000012340 ortholog_one2one 2 retrogenes
retro_tgut_15, retro_tgut_30,
Tarsius syrichta ENSTSYG00000010951 ortholog_one2one 1 retrogene
retro_tsyr_1871,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_576 89.84 56.61
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2. retro_cjac_2932 77.81 57.54
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Download FASTA sequences of all ENSCJAG00000016947 retrocopies