Parental gene:

NUDCD2, ENSCJAG00000015367

Aliases:None
Description:NudC domain containing 2 [Source:HGNC Symbol;Acc:30535]
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:24608466..24614725(-)


>ENSCJAG00000015367
ATGTCGGCCCCGTTTGAGGAGCGGAGTGGGGTGGTTCCGTGCGGGACTCCGTGGGGCCAGTGGTACCAGACCCTGGAGGA
GGTGTTTATTGAAGTTCAGGTGCCGCCAGGCACGCGCGCCCAGGATATCCAGTGCGGCCTGCAAAGCCGGCATGTGGCGC
TGGCGGTGGGCGGCCGCGAGATCCTCAAGGGCAAACTCTTTGATTCTACAATAGCTGATGAGGGAACATGGACTTTGGAG
GATAGAAAAATGGTTCGTATTGTTCTTACCAAGACAAAGAGAGATGCAGCAAATTGTTGGACTTCTCTACTAGAATCTGA
ATATGCAGCTGATCCTTGGGTACAAGACCAAATGCAGAGAAAGCTTACATTAGAGAGATTCCAAAAAGAAAATCCTGGTT
TTGACTTCAGTGGAGCAGAAATCTCAGGAAACTACACTAAAGGTGGACCAGATTTCTCAAACCTTGAGAAATAA

Library Parental gene expression (RPM)
SRP051959_colon 6 .48 RPM
SRP051959_heart 5 .21 RPM
SRP051959_kidney 7 .83 RPM
SRP051959_liver 9 .21 RPM
SRP051959_lung 6 .77 RPM
SRP051959_lymph_node 7 .90 RPM
SRP051959_skeletal_muscle 6 .14 RPM
SRP051959_spleen 7 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005270 ortholog_one2one 1 retrogene
retro_amel_535,
Bos taurus ENSBTAG00000014772 ortholog_one2one 1 retrogene
retro_btau_1735,
Cavia porcellus ENSCPOG00000000877 ortholog_one2one 1 retrogene
retro_cpor_936,
Dipodomys ordii ENSDORG00000014291 ortholog_one2one 1 retrogene
retro_dord_188,
Macropus eugenii ENSMEUG00000004802 ortholog_one2one 1 retrogene
retro_meug_1673,
Myotis lucifugus ENSMLUG00000001670 ortholog_one2one 1 retrogene
retro_mluc_1154,
Monodelphis domestica ENSMODG00000007641 ortholog_one2one 2 retrogenes
retro_mdom_1058, retro_mdom_2016,
Ornithorhynchus anatinus ENSOANG00000021414 ortholog_one2one 1 retrogene
retro_oana_122,
Oryctolagus cuniculus ENSOCUG00000005783 ortholog_one2one 1 retrogene
retro_ocun_819,
Otolemur garnettii ENSOGAG00000024929 ortholog_one2one 3 retrogenes
retro_ogar_1486, retro_ogar_1696, retro_ogar_482,
Sarcophilus harrisii ENSSHAG00000007551 ortholog_one2one 1 retrogene
retro_shar_559,
Ictidomys tridecemlineatus ENSSTOG00000028665 ortholog_one2one 1 retrogene
retro_itri_1770,
Tupaia belangeri ENSTBEG00000000307 ortholog_one2one 1 retrogene
retro_tbel_507,
Tarsius syrichta ENSTSYG00000008090 ortholog_one2one 1 retrogene
retro_tsyr_1638,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2093 89.36 59.24
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Download FASTA sequences of all ENSCJAG00000015367 retrocopies