Parental gene:

RAP1A, ENSCJAG00000013392

Aliases:None
Description:RAP1A, member of RAS oncogene family [Source:HGNC Symbol;Acc:9855]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:147595477..147686396(+)


>ENSCJAG00000013392
ATGCGTGAGTACAAGCTAGTGGTCCTTGGTTCAGGAGGCGTTGGGAAGTCTGCTCTGACAGTTCAGTTTGTTCAGGGAAT
TTTTGTTGAAAAATATGACCCAACGATAGAAGATTCCTACAGAAAGCAAGTTGAAGTCGATTGCCAACAGTGTATGCTCG
AAATCCTGGATACTGCGGGGACAGAGCAATTTACAGCGATGAGGGATTTGTATATGAAGAATGGCCAAGGTTTTGCACTA
GTATATTCTATTACAGCTCAGTCCACGTTTAATGACTTACAGGACCTGAGGGAACAGATTTTACGGGTTAAGGACACAGA
AGATGTTCCAATGATTTTGGTTGGCAATAAATGTGACCTGGAAGATGAGCGAGTAGTTGGCAAAGAACAGGGCCAGAATT
TAGCAAGACAGTGGTGTAACTGTGCCTTTTTAGAGTCTTCTGCAAAGTCAAAGATCAATGTTAATGAGATCTTTTATGAC
CTGGTCAGACAGATAAATAGAAAAACACCAGTGGAAAAGAAGAAGCCTAAAAAGAAATCATGTCTGCTGCTCTAA

Library Parental gene expression (RPM)
SRP051959_colon 16 .55 RPM
SRP051959_heart 21 .98 RPM
SRP051959_kidney 12 .38 RPM
SRP051959_liver 14 .66 RPM
SRP051959_lung 26 .00 RPM
SRP051959_lymph_node 32 .99 RPM
SRP051959_skeletal_muscle 15 .46 RPM
SRP051959_spleen 23 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005384 ortholog_one2one 1 retrogene
retro_amel_1764,
Canis familiaris ENSCAFG00000013686 ortholog_one2one 1 retrogene
retro_cfam_696,
Callithrix jacchus ENSCJAG00000007261 within_species_paralog 3 retrogenes
retro_cjac_1435, retro_cjac_2371, retro_cjac_607,
Callithrix jacchus ENSCJAG00000007630 other_paralog 1 retrogene
retro_cjac_3313,
Callithrix jacchus ENSCJAG00000036517 other_paralog 1 retrogene
retro_cjac_2400,
Dasypus novemcinctus ENSDNOG00000007809 ortholog_one2one 5 retrogenes
retro_dnov_101, retro_dnov_1617, retro_dnov_1764, retro_dnov_628, retro_dnov_94,
Equus caballus ENSECAG00000016434 ortholog_one2many 1 retrogene
retro_ecab_99,
Erinaceus europaeus ENSEEUG00000010446 ortholog_one2one 2 retrogenes
retro_eeur_306, retro_eeur_361,
Echinops telfairi ENSETEG00000016893 ortholog_one2one 2 retrogenes
retro_etel_1196, retro_etel_176,
Homo sapiens ENSG00000116473 ortholog_one2one 1 retrogene
retro_hsap_1364,
Myotis lucifugus ENSMLUG00000010571 ortholog_one2one 3 retrogenes
retro_mluc_2311, retro_mluc_2312, retro_mluc_2313,
Monodelphis domestica ENSMODG00000001323 ortholog_one2many 3 retrogenes
retro_mdom_1327, retro_mdom_139, retro_mdom_1777,
Mus musculus ENSMUSG00000068798 ortholog_one2one 2 retrogenes
retro_mmus_1963, retro_mmus_3027,
Nomascus leucogenys ENSNLEG00000004018 ortholog_one2one 1 retrogene
retro_nleu_1069,
Ochotona princeps ENSOPRG00000003999 ortholog_one2one 3 retrogenes
retro_opri_321, retro_opri_460, retro_opri_875,
Pongo abelii ENSPPYG00000001028 ortholog_one2one 1 retrogene
retro_pabe_1132,
Pan troglodytes ENSPTRG00000001102 ortholog_one2one 1 retrogene
retro_ptro_937,
Rattus norvegicus ENSRNOG00000032463 ortholog_one2one 3 retrogenes
retro_rnor_1147, retro_rnor_1494, retro_rnor_1639,
Ictidomys tridecemlineatus ENSSTOG00000027847 ortholog_one2one 1 retrogene
retro_itri_81,
Tarsius syrichta ENSTSYG00000004521 ortholog_one2one 3 retrogenes
retro_tsyr_1546, retro_tsyr_1829, retro_tsyr_2140,
Vicugna pacos ENSVPAG00000010033 ortholog_one2one 1 retrogene
retro_vpac_491,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_728 86.05 70.11
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2. retro_cjac_1671 86.70 100.00
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3. retro_cjac_2218 83.67 79.89
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4. retro_cjac_3376 85.03 79.89
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5. retro_cjac_3707 78.98 85.33
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6. retro_cjac_3843 76.63 98.91
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7. retro_cjac_3844 79.35 98.91
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Download FASTA sequences of all ENSCJAG00000013392 retrocopies