Parental gene:

ENSCJAG00000012231

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:8:111681084..111695740(+)


>ENSCJAG00000012231
ATGGCGGGCCACCTCGTGCTCTACAACGGCGCCAAGATGCCCATCCTCGGGCTGGGCACCTGGAAGTCCCCTCCAGGCCA
AGTGACCGAGGCTGTGAAGGTGGCCATCGACGTTGGGTACCGCCACATCGACTGTGCCCATGTGTACCACAATGAGAATG
AGGTGGGGGTAGCCATTCAGGAGAAGCTCAAGGAGCAGGTGGTAAAGCGTGAGGAGCTGTTCATCGTCAGCAAGCTGTGG
TGCACGTACCATGAGAAGGGCCTGGTGAAAGGAGCCTGCCTGAAGACGCTCAGCGACCTGAAGCTGGACTACCTGGACCT
CTACCTTATTCACTGGCCAACTGGCTTTAAGCCTGGGAAGGAATTTTTCCCATTGGATGAGTCAGGCAACGTGATTCCCA
GTGACACCAACATTCTGGACACGTGGGCGGCCATGGAAGAACTGGTGGATGAAGGGCTGGTGAAAGCTATTGGCATCTCC
AACTTCAACCATCTCCAGGTGGAGAGGATCTTAAACAAACCTGGCTTAAAGTATAAGCCTGCAGTTAACCAGATTGAGTG
CCACCCATACCTCACTCAGGAGAAGTTAATCCAGTACTGCCAGTCCAAAGGCATCGTGGTGACCGCCTACAGCCCCCTAG
GCTCTCCCGACAGGCCCTGGGCCAAGCCCGAGGACCCTTCCCTCCTGGAGGATCCCAGGATCAAGGCGATCGCAGACAAG
CACAATAAAACCACAGCTCAGGTGCTGATCCGGTTCCCCATGCAGAGGAACTTGGTGGTGATCCCCAAGTCTGTGACACC
AGAACGCATTGCTGAGAACTTTAAGGTCTTTGACTTTGAACTGAGCAGCGAGGATATGACCACCTTACTCGGCTACAACA
GGAACTGGAGGGTCTGTGCCTTGATGAGCGCTGTCTCCCACAAGGATTACCCCTTCCATGAAGAGTTTTGA

Library Parental gene expression (RPM)
SRP051959_colon 8 .36 RPM
SRP051959_heart 19 .91 RPM
SRP051959_kidney 20 .59 RPM
SRP051959_liver 9 .40 RPM
SRP051959_lung 16 .95 RPM
SRP051959_lymph_node 16 .94 RPM
SRP051959_skeletal_muscle 24 .87 RPM
SRP051959_spleen 55 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009902 ortholog_many2many 3 retrogenes
retro_btau_1092, retro_btau_1642, retro_btau_821,
Canis familiaris ENSCAFG00000001290 ortholog_many2many 1 retrogene
retro_cfam_63,
Callithrix jacchus ENSCJAG00000012250 within_species_paralog 1 retrogene
retro_cjac_3038,
Callithrix jacchus ENSCJAG00000012872 other_paralog 1 retrogene
retro_cjac_1688,
Callithrix jacchus ENSCJAG00000013633 within_species_paralog 2 retrogenes
retro_cjac_3093, retro_cjac_3334,
Dasypus novemcinctus ENSDNOG00000011358 ortholog_one2many 2 retrogenes
retro_dnov_2214, retro_dnov_721,
Homo sapiens ENSG00000085662 ortholog_one2many 7 retrogenes
retro_hsap_1261, retro_hsap_1422, retro_hsap_2049, retro_hsap_2663, retro_hsap_312, retro_hsap_4745, retro_hsap_851,
Gorilla gorilla ENSGGOG00000011731 ortholog_one2many 6 retrogenes
retro_ggor_1477, retro_ggor_1859, retro_ggor_2948, retro_ggor_343, retro_ggor_695, retro_ggor_991,
Macropus eugenii ENSMEUG00000003434 ortholog_one2many 6 retrogenes
retro_meug_1455, retro_meug_1505, retro_meug_1811, retro_meug_1980, retro_meug_486, retro_meug_504,
Microcebus murinus ENSMICG00000001921 ortholog_one2many 2 retrogenes
retro_mmur_1087, retro_mmur_66,
Mus musculus ENSMUSG00000001642 ortholog_one2many 10 retrogenes
retro_mmus_1252, retro_mmus_2082, retro_mmus_2678, retro_mmus_3242, retro_mmus_3488, retro_mmus_444, retro_mmus_534, retro_mmus_764, retro_mmus_784, retro_mmus_920,
Nomascus leucogenys ENSNLEG00000013037 ortholog_one2many 7 retrogenes
retro_nleu_1246, retro_nleu_1533, retro_nleu_2099, retro_nleu_2569, retro_nleu_2570, retro_nleu_418, retro_nleu_419,
Otolemur garnettii ENSOGAG00000016156 ortholog_one2many 2 retrogenes
retro_ogar_1282, retro_ogar_808,
Procavia capensis ENSPCAG00000016195 ortholog_one2many 1 retrogene
retro_pcap_428,
Pongo abelii ENSPPYG00000018017 ortholog_one2many 8 retrogenes
retro_pabe_1050, retro_pabe_1089, retro_pabe_1176, retro_pabe_1672, retro_pabe_2411, retro_pabe_3691, retro_pabe_370, retro_pabe_694,
Pan troglodytes ENSPTRG00000019716 ortholog_one2many 6 retrogenes
retro_ptro_1365, retro_ptro_1794, retro_ptro_254, retro_ptro_3040, retro_ptro_3160, retro_ptro_972,
Rattus norvegicus ENSRNOG00000009513 ortholog_many2many 1 retrogene
retro_rnor_1438,
Tupaia belangeri ENSTBEG00000013327 ortholog_one2many 1 retrogene
retro_tbel_3093,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_476 97.47 100.00
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2. retro_cjac_621 94.27 71.52
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3. retro_cjac_1140 94.03 100.00
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4. retro_cjac_1167 84.80 64.24
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5. retro_cjac_1718 75.83 75.32
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6. retro_cjac_1973 98.74 100.00
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7. retro_cjac_2550 85.22 100.00
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8. retro_cjac_3102 97.15 100.00
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9. retro_cjac_3143 98.42 100.00
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10. retro_cjac_3297 93.84 92.41
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11. retro_cjac_3692 94.48 56.01
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12. retro_cjac_3840 85.71 72.15
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13. retro_cjac_3872 97.47 100.00
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14. retro_cjac_3910 85.20 69.62
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Download FASTA sequences of all ENSCJAG00000012231 retrocopies