Parental gene:

ZC3H15, ENSCJAG00000005931

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:6:101558085..101580305(+)


>ENSCJAG00000005931
ATGCCCCCCAAGAAACAGGCTCAGGCCGGGGGCAGCAAAAAAGCGGAGCAGAAAAAGAAGGAGAAGATTATCGAAGACAA
AACTTTTGGTTTGAAGAATAAGAAAGGAGCAAAGCAACAGAAGTTTATCAAGGCTGTAACACATCAGGTTAAATTTGGTC
AACAAAATCCACGTCAGGTAGCACAGAGTGAAGCTGAAAAGAAATTGAAGAAGGATGACAAGAAGAAAGAATTGCAGGAG
CTAAATGAACTATTCAAACCTGTAGTTGCTGCTCAAAAAATAAGTAAAGGTGCAGATCCCAAGTCTGTGGTGTGTGCATT
CTTCAAGCAAGGACAGTGTACTAAAGGAGATAAGTGTAAGTTCTCTCATGACTTGACTCTAGAGAGAAAATGTGAAAAGC
GAAGTGTTTACATTGATGCAAGAGATGAAGAACTTGAAAAAGATACTATGGATAATTGGGATGAGAAAAAGCTGGAAGAA
GTAGTGAACAAGAAGCACGGTGAGGCGGAAAAGAAAAAACCAAAAACTCAAATAGTGTGCAAGCATTTCCTTGAAGCTAT
TGAAAACAACAAGTATGGCTGGTTTTGGGTATGCCCTGGCGGGGGTGATATTTGCATGTATCGTCATGCACTTCCTCCTG
GATTTGTGTTGAAAAAAGATAAAAAGAAAGAAGAGAAAGAAGATGAAATTTCGTTAGAAGATCTAATTGAAAGAGAGCGT
TCTGCCCTAGGTCCAAATGTTACCAAAATCACTCTAGAATCTTTTCTTGCGTGGAAGAAAAGGAAAAGACAAGAAAAGAT
TGATAAACTTGAACAAGACATGGAAAGAAGGAAAGCTGACTTCAAAGCAGGGAAAGCACTAGTGATCAGTGGTCGTGAAG
TGTTTGAATTTCGTCCTGAACTGGTCAATGATGATGATGAGGAAGCAGATGATACCCATTACACCCAGGGAACAGGTGGT
GATGAGGTTGATGATTCCGTGAGCATAAATGACATAGATTTAAGCCAGTACATCCCAAGAGATGTAGATGAAACAGGTAT
TACTGTAGCCAGTCTTGAAAGATTCAGCACATATACTTCCGATAAAGATGAAAACAAATTAAATGAAGCTTCTGGAGGTA
GGGCTGAAAATGGTGAAAGAAGTGACTTGGAAGAGGACAACGAAAGAGAGGGACCGGAAAATGGAGCTATTGATGCTGTT
CCTGTTGATGAAAATCTTTTCACTGGAGAGGATTTGGATGAACTAGAAGAAGAACTAAATACACTTGATTTAGAAGAATG
A

Library Parental gene expression (RPM)
SRP051959_colon 20 .86 RPM
SRP051959_heart 15 .49 RPM
SRP051959_kidney 31 .64 RPM
SRP051959_liver 25 .08 RPM
SRP051959_lung 23 .83 RPM
SRP051959_lymph_node 26 .73 RPM
SRP051959_skeletal_muscle 15 .05 RPM
SRP051959_spleen 26 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000021762 ortholog_one2one 1 retrogene
retro_btau_1223,
Choloepus hoffmanni ENSCHOG00000011958 ortholog_one2one 1 retrogene
retro_chof_2120,
Cavia porcellus ENSCPOG00000012965 ortholog_one2one 2 retrogenes
retro_cpor_1294, retro_cpor_919,
Dipodomys ordii ENSDORG00000011664 ortholog_one2one 1 retrogene
retro_dord_666,
Loxodonta africana ENSLAFG00000001563 possible_ortholog 1 retrogene
retro_lafr_941,
Monodelphis domestica ENSMODG00000027565 ortholog_one2many 5 retrogenes
retro_mdom_1230, retro_mdom_1321, retro_mdom_1744, retro_mdom_1942, retro_mdom_871,
Oryctolagus cuniculus ENSOCUG00000011903 ortholog_one2one 1 retrogene
retro_ocun_886,
Otolemur garnettii ENSOGAG00000002182 ortholog_one2one 2 retrogenes
retro_ogar_1093, retro_ogar_611,
Ochotona princeps ENSOPRG00000015790 ortholog_one2many 2 retrogenes
retro_opri_169, retro_opri_609,
Pan troglodytes ENSPTRG00000012717 ortholog_one2one 1 retrogene
retro_ptro_348,
Rattus norvegicus ENSRNOG00000005256 ortholog_one2many 4 retrogenes
retro_rnor_2628, retro_rnor_284, retro_rnor_662, retro_rnor_925,
Sorex araneus ENSSARG00000012071 ortholog_one2one 1 retrogene
retro_sara_363,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2883 92.28 64.90
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cjac_3986 81.06 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCJAG00000005931 retrocopies