Parental gene:

ZC3H15, ENSBTAG00000021762

Aliases:None
Description:Zinc finger CCCH domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q1RMM1]
Organism:Cow (Bos taurus)
Coordinates:2:9849226..9870250(-)


>ENSBTAG00000021762
ATGCCCCCCAAGAAACAGGCTCAGGCCGGGGGCAGCAAAAAGGCGGAGCAGAAAAAGAAGGAGAAGATTATCGAAGACAA
AACTTTTGGTCTGAAGAATAAGAAAGGAGCAAAGCAACAGAAGTTTATCAAGGCTGTCACTCATCAAGTTAAATTTGGTC
AACAGAATCCACGTCAGGTAGCACAAAGTGAAGCTGAAAAGAAGTTGAAGAAAGATGACAAGAAGAAAGAATTGCAAGAG
CTAAATGAGTTGTTCAAACCTGTAGTTGCTGCTCAAAAAATAAGTAAAGGTGCAGATCCCAAATCCGTAGTATGTGCATT
CTTCAAGCAAGGACAGTGTACTAAAGGAGATAAGTGTAAGTTCTCTCATGACTTGACTCTGGAGAGAAAATGTGAAAAGC
GAAGTGTTTACATTGATGCAAGAGATGAAGAACTTGAGAAAGATACTATGGATAATTGGGATGAGAAAAAACTGGAAGAA
GTTGTGAACAAGAAGCACGGTGAGGCGGAAAAGAAAAAACCAAAAACTCAAATAGTGTGCAAGCATTTCCTTGAAGCTAT
TGAAAACAACAAATACGGCTGGTTTTGGGTGTGTCCTGGAGGGGGTGATATTTGCATGTATCGTCATGCACTGCCTCCTG
GATTTGTCTTGAAAAAAGATAAAAAGAAAGAAGAGAAAGAAGATGAAATTTCATTAGAAGATCTAATTGAAAGAGAGCGT
TCTGCCCTAGGTCCAAATGTTACCAAAATCACTCTAGAATCTTTTCTTGCATGGAAGAAAAGAAAAAGACAAGAAAAGAT
TGATAAACTTGAACAAGATATAGAAAGAAGGAAAGCAGACTTCAAAGCTGGGAAAGCATTAGTGATCAGTGGTCGTGAGG
TGTTTGAATTTCGTCCTGAACTGGTTGACGATGATGATGAGGAAGCAGATGATACCCGTTACACCCAGGGAACAGGTGGT
GATGAGGTTGATGATTCAGTGAGTGTAAATGACATAGATTTAAGCCTGTACATCCCAAGAGATGTAGATGAGACAGGTAT
TACTGTAGCCAGTCTTGAAAGATTCAGCACATATACTTCAGAAAAGGATGAAAACAAATTAAGTGAAGCTTCCGGAGGTA
GGGCTGAAAATGGTGAGAGAAGTGATTTGGAAGAGGACAACGAAGGGGAAGGACAGGAAAATGGAGCCATCGATGCTGTT
CCTGTTGATGAAAATCTGTTTACTGGGGAAGATTTGGATGAACTAGAAGAAGAATTAAACACACTTGATTTAGAAGAATG
A

Library Parental gene expression (RPM)
ERP005899_liver 30 .93 RPM
ERP005899_muscle 42 .50 RPM
SRP017611_brain 29 .42 RPM
SRP017611_kidney 41 .49 RPM
SRP017611_liver 24 .69 RPM
SRP030211_testis 92 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000011958 ortholog_one2one 1 retrogene
retro_chof_2120,
Callithrix jacchus ENSCJAG00000005931 ortholog_one2one 2 retrogenes
retro_cjac_2883, retro_cjac_3986,
Cavia porcellus ENSCPOG00000012965 ortholog_one2one 2 retrogenes
retro_cpor_1294, retro_cpor_919,
Dipodomys ordii ENSDORG00000011664 ortholog_one2one 1 retrogene
retro_dord_666,
Loxodonta africana ENSLAFG00000001563 possible_ortholog 1 retrogene
retro_lafr_941,
Monodelphis domestica ENSMODG00000027565 ortholog_one2many 5 retrogenes
retro_mdom_1230, retro_mdom_1321, retro_mdom_1744, retro_mdom_1942, retro_mdom_871,
Oryctolagus cuniculus ENSOCUG00000011903 ortholog_one2one 1 retrogene
retro_ocun_886,
Otolemur garnettii ENSOGAG00000002182 ortholog_one2one 2 retrogenes
retro_ogar_1093, retro_ogar_611,
Ochotona princeps ENSOPRG00000015790 ortholog_one2many 2 retrogenes
retro_opri_169, retro_opri_609,
Pan troglodytes ENSPTRG00000012717 ortholog_one2one 1 retrogene
retro_ptro_348,
Rattus norvegicus ENSRNOG00000005256 ortholog_one2many 4 retrogenes
retro_rnor_2628, retro_rnor_284, retro_rnor_662, retro_rnor_925,
Sorex araneus ENSSARG00000012071 ortholog_one2one 1 retrogene
retro_sara_363,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1223 95.54 100.00
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Download FASTA sequences of all ENSBTAG00000021762 retrocopies