Parental gene:

TAF13, ENSCJAG00000002701

Aliases:None
Description:TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa [Source:HGNC Symbol;Acc:11546]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:144919099..144934146(-)


>ENSCJAG00000002701
ATGGCAGATGAGGAAGAGGACCCTACCTTTGAGGAAGAAAATGAAGAAATTGGAGGAGGTGCAGAAGGTGGACAGGGTAA
AAGAAAGAGACTTTTTTCTAAAGAATTGCGATGTATGATGTATGGCTTTGGGGATGACCAGAATCCTTATACTGAGTCAG
TGGATATTCTTGAAGATCTTGTCATAGAGTTTATCACTGAAATGACTCACAAGGCGATGTCCATTGGAAGACAAGGTCGA
GTACAAGTTGAGGATATCGTCTTCTTGATTCGAAAGGACCCAAGGAAATTTGCCAGGGTTAAAGACTTGCTTACTATGAA
TGAAGAATTGAAACGAGCTAGAAAAGCATTTGATGAAGCAAACTATGGATCTTGA

Library Parental gene expression (RPM)
SRP051959_colon 2 .75 RPM
SRP051959_heart 3 .00 RPM
SRP051959_kidney 2 .66 RPM
SRP051959_liver 3 .73 RPM
SRP051959_lung 3 .01 RPM
SRP051959_lymph_node 1 .83 RPM
SRP051959_skeletal_muscle 3 .89 RPM
SRP051959_spleen 3 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004542 ortholog_one2one 1 retrogene
retro_amel_1015,
Canis familiaris ENSCAFG00000019855 ortholog_one2one 1 retrogene
retro_cfam_1084,
Choloepus hoffmanni ENSCHOG00000003347 ortholog_one2one 2 retrogenes
retro_chof_1739, retro_chof_296,
Cavia porcellus ENSCPOG00000001081 ortholog_one2one 1 retrogene
retro_cpor_1042,
Dasypus novemcinctus ENSDNOG00000018227 ortholog_one2many 16 retrogenes
retro_dnov_1126, retro_dnov_1140, retro_dnov_1237, retro_dnov_1308, retro_dnov_1539, retro_dnov_1899, retro_dnov_214, retro_dnov_222, retro_dnov_234, retro_dnov_314, retro_dnov_577, retro_dnov_599, retro_dnov_630, retro_dnov_703, retro_dnov_893, retro_dnov_925,
Loxodonta africana ENSLAFG00000011432 ortholog_one2one 2 retrogenes
retro_lafr_781, retro_lafr_799,
Microcebus murinus ENSMICG00000008725 ortholog_one2one 5 retrogenes
retro_mmur_1061, retro_mmur_128, retro_mmur_1376, retro_mmur_53, retro_mmur_576,
Mus musculus ENSMUSG00000048100 ortholog_one2one 2 retrogenes
retro_mmus_1272, retro_mmus_710,
Nomascus leucogenys ENSNLEG00000002350 ortholog_one2many 1 retrogene
retro_nleu_27,
Otolemur garnettii ENSOGAG00000013494 ortholog_one2many 6 retrogenes
retro_ogar_192, retro_ogar_2232, retro_ogar_23, retro_ogar_2399, retro_ogar_2659, retro_ogar_2931,
Procavia capensis ENSPCAG00000005773 ortholog_one2many 1 retrogene
retro_pcap_80,
Sorex araneus ENSSARG00000008033 ortholog_one2one 1 retrogene
retro_sara_531,
Sus scrofa ENSSSCG00000006839 ortholog_one2many 1 retrogene
retro_sscr_87,
Ictidomys tridecemlineatus ENSSTOG00000011144 ortholog_one2many 8 retrogenes
retro_itri_1094, retro_itri_1650, retro_itri_1717, retro_itri_1728, retro_itri_214, retro_itri_70, retro_itri_812, retro_itri_969,
Tursiops truncatus ENSTTRG00000003167 ortholog_one2one 1 retrogene
retro_ttru_730,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_969 93.55 100.00
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2. retro_cjac_1241 87.20 100.00
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3. retro_cjac_1268 66.67 95.16
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Download FASTA sequences of all ENSCJAG00000002701 retrocopies