Parental gene:

SPIC, ENSCJAG00000001906

Aliases:None
Description:Spi-C transcription factor (Spi-1/PU.1 related) [Source:HGNC Symbol;Acc:29549]
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:91621317..91730056(+)


>ENSCJAG00000001906
ATGACGTGCGTTGAACAAGACAAGCTGGGTCAAGCATTTGAGGATGCTTTTGAGGTACTGAGGCAACATTCAATTGGCGA
TCTTCAGTATTCGCCAGATTACAAAAATTACCTGGCTTTAATCAACCATCGTGCTTATGTCAAAGGAAATTCCAGCTGCT
ATGGAGTGTTGCCTACAGAGGAGCCTGTCTATAATTGGAGAACGGTAATTAACAATGCTGCGGACTTCTATTTTGAAGGA
AATATTCATCAATCTCTGCAGAACATAACTGAAAACCAGCTGATACAACCCACTATTCTCCAGCAAAAGCGGGGAAAAGG
CAGGAAGAAGCTCCGACTGTTTGAATACCTTCACGAATCCCTGTGTAATCCCGAGATGGCATCTTGTATTCAGTGGGTAG
ATAAAACCAAAGGCATTTTTCAATTTGTGTCAAAAAACAAAGAAAAACTTGCCGAGCTTTGGGGAAAAAGAAAGGGCAAC
CGGAAGACCATGACTTACCAGAAAATGGCCAGGGCACTGAGAAATTATGGAAGAAGTGGGGAAATTACTAAAATCCGGAG
GAAGTTGACTTACCAGTTCAGTGAGGCCATTCTCCAAAGACTCTCTCCATCTTATTTCTTGGGGAAAGAGATATTCTACT
CACCATGTGTTCAACCTGATCAAGAATATCTCAGTTTAAATAACTGGAATGCAAATTATAATTATACATATGCCAATTAC
CATGAGCTAAATTACTATGATTGCTAA

Library Parental gene expression (RPM)
SRP051959_colon 0 .11 RPM
SRP051959_heart 0 .25 RPM
SRP051959_kidney 0 .02 RPM
SRP051959_liver 4 .20 RPM
SRP051959_lung 1 .68 RPM
SRP051959_lymph_node 3 .56 RPM
SRP051959_skeletal_muscle 0 .02 RPM
SRP051959_spleen 70 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009904 ortholog_one2one 2 retrogenes
retro_btau_1281, retro_btau_1837,
Dasypus novemcinctus ENSDNOG00000004496 ortholog_one2one 1 retrogene
retro_dnov_759,
Equus caballus ENSECAG00000009614 ortholog_one2many 1 retrogene
retro_ecab_542,
Echinops telfairi ENSETEG00000004217 ortholog_one2one 6 retrogenes
retro_etel_1675, retro_etel_2007, retro_etel_2008, retro_etel_593, retro_etel_929, retro_etel_933,
Homo sapiens ENSG00000166211 ortholog_one2one 4 retrogenes
retro_hsap_1748, retro_hsap_1800, retro_hsap_3135, retro_hsap_864,
Gorilla gorilla ENSGGOG00000024597 ortholog_one2one 4 retrogenes
retro_ggor_1324, retro_ggor_1362, retro_ggor_2255, retro_ggor_703,
Loxodonta africana ENSLAFG00000015661 ortholog_one2one 1 retrogene
retro_lafr_912,
Myotis lucifugus ENSMLUG00000011052 ortholog_one2one 1 retrogene
retro_mluc_2169,
Macaca mulatta ENSMMUG00000020873 ortholog_one2many 1 retrogene
retro_mmul_1245,
Nomascus leucogenys ENSNLEG00000006232 ortholog_one2one 1 retrogene
retro_nleu_53,
Oryctolagus cuniculus ENSOCUG00000008070 ortholog_one2many 1 retrogene
retro_ocun_161,
Otolemur garnettii ENSOGAG00000015148 ortholog_one2one 1 retrogene
retro_ogar_1782,
Pongo abelii ENSPPYG00000004873 ortholog_one2one 4 retrogenes
retro_pabe_1444, retro_pabe_1445, retro_pabe_2819, retro_pabe_686,
Pan troglodytes ENSPTRG00000005351 ortholog_one2one 4 retrogenes
retro_ptro_1206, retro_ptro_1218, retro_ptro_3070, retro_ptro_598,
Rattus norvegicus ENSRNOG00000005720 ortholog_one2one 1 retrogene
retro_rnor_1519,
Ictidomys tridecemlineatus ENSSTOG00000015457 ortholog_one2many 3 retrogenes
retro_itri_1785, retro_itri_235, retro_itri_29,
Tursiops truncatus ENSTTRG00000017205 ortholog_one2one 1 retrogene
retro_ttru_1708,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3835 58.00 97.98
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Download FASTA sequences of all ENSCJAG00000001906 retrocopies