Parental gene:

DUT, ENSCJAG00000001813

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:25476549..25493775(+)


>ENSCJAG00000001813
ATGACTCCCATCTGCCCTCGCCCCGCGCTCTGCTATCATTTCCTTCCATCTCTGCTTCGCTCAGCGATACAAAACGCGAC
AGGCGCACGGCTGAGGGCCGAGGCAGCGGGACTCTCCGAGCCAGGCCAGTCTCTCGGTCGCGTCGCGCAGCACGGGAGGC
CTCGGGCTGCTGTCCAGCGCTGCCGCCTGAGCCGAGCTGCCGAGAGCCAGTACAGGCTAGAGACAGTGGGGGAAGTAGGG
CGGCGTTCTCCTCGCTCGCCTTCTGGCTCTACCATGCCCTCCTCTGAAGAGACACCCGCCGTTTCACCCAGCAAGCGGGC
TCGGCCCGCGGAGGAGGGCGTCATGCAGCTCCGCTTTGCCAGGCTCTCCGAGCACGCCACGGCCCCCACGCGGGGCTCCG
CTCGGGCCGCGGGCTACGACCTGTACAGTGCCTATGATTATACAATACCACCTATGGAGAAAGCTCTTGTGAAAACAGAC
ATACAGATAGCGCTTCCTTCTGGGTGTTACGGAAGAGTAGCTCCACGGTCTGGCTTGGCTGCAAAACACTTTATTGATGT
AGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTTTGGCAAAGAAAAGTTTGAAG
TCAAAAAAGGTGATCGAATTGCACAGCTCATTTGTGAACGGATTTTTTACCCAGAAATAGAAGAAGTTCAAGCTTTGGAT
GACACCAAAAGGGGTTCGGGAGGTTTTGGTTCCACTGGGAAGAATTAA

Library Parental gene expression (RPM)
SRP051959_colon 15 .75 RPM
SRP051959_heart 3 .96 RPM
SRP051959_kidney 6 .37 RPM
SRP051959_liver 5 .16 RPM
SRP051959_lung 6 .38 RPM
SRP051959_lymph_node 9 .20 RPM
SRP051959_skeletal_muscle 3 .73 RPM
SRP051959_spleen 10 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001873 ortholog_one2one 1 retrogene
retro_amel_1411,
Bos taurus ENSBTAG00000011998 ortholog_one2many 3 retrogenes
retro_btau_1765, retro_btau_510, retro_btau_60,
Dasypus novemcinctus ENSDNOG00000024791 ortholog_one2one 8 retrogenes
retro_dnov_204, retro_dnov_2096, retro_dnov_2230, retro_dnov_225, retro_dnov_2270, retro_dnov_2608, retro_dnov_528, retro_dnov_639,
Dipodomys ordii ENSDORG00000010560 ortholog_one2one 1 retrogene
retro_dord_146,
Equus caballus ENSECAG00000015971 ortholog_one2one 1 retrogene
retro_ecab_375,
Felis catus ENSFCAG00000015350 ortholog_one2many 3 retrogenes
retro_fcat_1158, retro_fcat_33, retro_fcat_937,
Homo sapiens ENSG00000128951 ortholog_one2one 6 retrogenes
retro_hsap_1698, retro_hsap_256, retro_hsap_2699, retro_hsap_2963, retro_hsap_3624, retro_hsap_4771,
Gorilla gorilla ENSGGOG00000005658 ortholog_one2one 5 retrogenes
retro_ggor_1272, retro_ggor_1453, retro_ggor_2053, retro_ggor_2974, retro_ggor_306,
Macropus eugenii ENSMEUG00000006318 ortholog_one2one 3 retrogenes
retro_meug_1739, retro_meug_2104, retro_meug_476,
Myotis lucifugus ENSMLUG00000006842 ortholog_one2one 2 retrogenes
retro_mluc_1550, retro_mluc_487,
Macaca mulatta ENSMMUG00000016898 ortholog_one2one 6 retrogenes
retro_mmul_1429, retro_mmul_2645, retro_mmul_449, retro_mmul_707, retro_mmul_720, retro_mmul_910,
Monodelphis domestica ENSMODG00000002687 ortholog_one2one 3 retrogenes
retro_mdom_1606, retro_mdom_1858, retro_mdom_693,
Nomascus leucogenys ENSNLEG00000005996 ortholog_one2one 2 retrogenes
retro_nleu_2602, retro_nleu_859,
Oryctolagus cuniculus ENSOCUG00000003862 ortholog_one2one 1 retrogene
retro_ocun_798,
Otolemur garnettii ENSOGAG00000028847 ortholog_one2one 7 retrogenes
retro_ogar_1207, retro_ogar_1422, retro_ogar_1500, retro_ogar_1653, retro_ogar_2348, retro_ogar_2815, retro_ogar_3485,
Pongo abelii ENSPPYG00000006454 ortholog_one2one 2 retrogenes
retro_pabe_3820, retro_pabe_3831,
Pan troglodytes ENSPTRG00000007044 ortholog_one2one 2 retrogenes
retro_ptro_216, retro_ptro_3177,
Rattus norvegicus ENSRNOG00000007221 ortholog_one2many 1 retrogene
retro_rnor_859,
Sus scrofa ENSSSCG00000026096 ortholog_one2one 3 retrogenes
retro_sscr_1121, retro_sscr_122, retro_sscr_175,
Ictidomys tridecemlineatus ENSSTOG00000007811 ortholog_one2many 1 retrogene
retro_itri_125,
Tarsius syrichta ENSTSYG00000012669 ortholog_one2one 9 retrogenes
retro_tsyr_1044, retro_tsyr_1236, retro_tsyr_1251, retro_tsyr_1825, retro_tsyr_1991, retro_tsyr_215, retro_tsyr_616, retro_tsyr_747, retro_tsyr_771,
Tursiops truncatus ENSTTRG00000015422 ortholog_one2one 2 retrogenes
retro_ttru_1834, retro_ttru_585,
Vicugna pacos ENSVPAG00000004723 ortholog_one2one 4 retrogenes
retro_vpac_213, retro_vpac_32, retro_vpac_527, retro_vpac_612,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1014 91.95 67.45
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2. retro_cjac_2008 66.92 50.59
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Download FASTA sequences of all ENSCJAG00000001813 retrocopies