Parental gene:

SNAP23, ENSCAFG00000011105

Aliases:None
Description:synaptosomal-associated protein, 23kDa [Source:HGNC Symbol;Acc:11131]
Organism:Dog (Canis familiaris)
Coordinates:30:9475521..9492215(+)


>ENSCAFG00000011105
ATGGATAATCTGTCACCAGAAGAAATTCAGCTGAGAGCCCACCAGGTTACTGATGAGTCTCTGGAAAGTACAAGGAGAAT
CCTGGGTTTAGCCATTGAGTCTCAGGATGCAGGAATCAAGACTATCACTATGCTGGATGAACAAGGGGAGCAACTAAACC
GCATAGAAGAAGGCATGGACCAAATAAATAAAGACATGAGAGAGGCAGAGAAGACTTTAACGGAACTCAACAAGTGCTGT
GGCCTTTGTGTCTGTCCATGTAATAGGACAAAGAACTTTGAGTCCAGTAAGGCCTACAAGGCAACATGGGGAGATGGTGA
AGACAACTCTCCTAGCAATGTAGTATCTAAGCAGCCAGGCCGAGTGACAAATGGGCAGCCTCAACAACCAGCCACTGGAG
CAGTTAGCGGTGGATACATTAAACGTATAACTAATGATGCTAGAGAAGATGAGATGGAAGAGAACCTGACTCAAGTGGGC
AGTATCCTAGGAAACCTAAAAAACATGGCCCTGGAAATGGGCAATGAGATCGAGGCTCAAAATCGAAAAATAGACCGGAT
CACAGAAAAGGCTGACACCAACAAAGATCGTATTGATATTGCCAATGCCAGAGCAAAGAAACTCATTGACAGCTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 4 .83 RPM
SRP017611_brain 6 .11 RPM
SRP017611_kidney 18 .75 RPM
SRP017611_liver 3 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015685 ortholog_one2many 1 retrogene
retro_acar_38,
Ailuropoda melanoleuca ENSAMEG00000015774 ortholog_one2one 1 retrogene
retro_amel_206,
Bos taurus ENSBTAG00000005661 ortholog_one2one 2 retrogenes
retro_btau_1622, retro_btau_371,
Choloepus hoffmanni ENSCHOG00000006468 ortholog_one2many 3 retrogenes
retro_chof_1, retro_chof_1652, retro_chof_1784,
Cavia porcellus ENSCPOG00000003638 ortholog_one2one 1 retrogene
retro_cpor_862,
Felis catus ENSFCAG00000013387 ortholog_one2one 1 retrogene
retro_fcat_1114,
Loxodonta africana ENSLAFG00000005462 ortholog_one2one 1 retrogene
retro_lafr_839,
Microcebus murinus ENSMICG00000000813 ortholog_one2one 2 retrogenes
retro_mmur_1188, retro_mmur_377,
Monodelphis domestica ENSMODG00000017889 ortholog_one2one 1 retrogene
retro_mdom_1772,
Mustela putorius furo ENSMPUG00000009856 ortholog_one2one 3 retrogenes
retro_mputfur_1181, retro_mputfur_692, retro_mputfur_915,
Mus musculus ENSMUSG00000027287 ortholog_one2one 1 retrogene
retro_mmus_2570,
Rattus norvegicus ENSRNOG00000050552 ortholog_one2one 2 retrogenes
retro_rnor_1505, retro_rnor_2389,
Tarsius syrichta ENSTSYG00000006589 ortholog_one2one 2 retrogenes
retro_tsyr_1020, retro_tsyr_715,
Tursiops truncatus ENSTTRG00000002561 ortholog_one2one 1 retrogene
retro_ttru_658,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1073 66.39 55.92
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2. retro_cfam_1780 99.38 76.78
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Download FASTA sequences of all ENSCAFG00000011105 retrocopies