Parental gene: | NUSAP1, ENSCAFG00000009538 |
| Aliases: | None |
| Description: | nucleolar and spindle associated protein 1 [Source:HGNC Symbol;Acc:18538] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 30:8396470..8434145(+) |
>ENSCAFG00000009538
ATGGCCATACCCTCCCTTGAGGAGCTTGACTCCTTCAAGTACAGCGACCTGCAGAACTTGGCCAAGAGTCTCGGCCTCCG
GGCTAACCTGAGGGCAGACAAGTTGTTAAAAGCCTTGAAAGCCTACCTTAAAGACGAAGCAAAAAAAGAAAATGAGAGTC
AGAATGGAACTCAAACTTCTGCATCCTCCTGGGATGAGACTGAGATGCAGATGAGCAGCCAGGAACAAGCTAAGAGGGAG
CCGGTTGGCCACATCACCAAAACAAGGAGAAGGTGCAAGAACCCTGACTCCCAGCAGGATCATTCAGAGATAAAAATAAG
TGATCACACTGACTTCCAGGATCCAGAGAAGCAGGAAAACCAGGATCTCAGAACTGTTGGAGAAGTTCCTTCACCACTAG
ATGAGAACCAAGGAGAGAAGAATGCAGTTTCCACAGGTAATGAAGATTCAAAGGTACCTGCAGAAAGAAAGAAGCATCTC
TACGCAGATGGGTTTTCCAAACCTGGAAAAAGTAAAAGAACTATAAGTGCTACTCCAAACTTTAAGAAGCTTCATGAGGC
TCGTTTTAAGGAAATGGAGTCCATTGATCAATATATTGAAAGGAAAAAGAAACATTTCGAAGAACACAACTCATTTAATG
AACTGAAGAAGCAGCCGGTCACCAAAGAAGTGGTGGTGACTCCAGTTCCTCTCCGGGGAAGGCTCCCTGAGGCTCGAACT
CCCTCCAGCCAGCGCCACTCACAGGGCCAGCCCCTGGGCCCTACAGGCCAGAGCACCTTGTGTGGGAAGGGGTCTGCCAA
GCGTTCCATTCTATCAGCAACTAAGATGAACGTCAGGTTTTCAGCTGCTACCAAAGATAATGAACATAAGCGTTCACTGA
CCAAGACTCCAGCCAGAAAGTCTCCACATGTGACCGTATGTGGGAGTACCCCAAAAGGCCAGGCTGTGCTCGGGACATGC
AAGTTAAAGACCGCAAAGGGGAATTCTGCTTCTGTTGTTACCCCATTCAAATTGACAACTGAGACAGCACAGACTCCAGT
CTCCAACAAGAAACCGGTGTTTGATCTCAAAGCAAGTCTGTCTCGTCCCCTCAACTATGAGCCACACAAAGGCAAACTGA
AACCATGGGGTCAACCTAAAGAAAATAGTTCTGTCAAGCAACATGCCAACAGAGTTAGCTTCCACAAGAAAACTTATAAA
CAACCTCCTCTCCAGACTCGGGAAGAACAACGGAAGCAACATGAACAAAGACGAAAGGAGAAGAAAGCAAAGGTTTTGGG
AGCTCGAAGAGGCCTCATTATGGCTGAAGATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012049_cerebellum | 9 .53 RPM |
| SRP017611_brain | 2 .06 RPM |
| SRP017611_kidney | 2 .84 RPM |
| SRP017611_liver | 0 .22 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000010774 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000012875 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000020956 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000009782 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000008844 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000034763 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000014283 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_578 | 96.25 | 66.82 | Please wait, loading  |
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| 2. | retro_cfam_1685 | 85.66 | 60.18 | Please wait, loading |
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| 3. | retro_cfam_2137 | 93.49 | 66.82 | Please wait, loading |
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Download FASTA sequences of all ENSCAFG00000009538 retrocopies